<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03123

Description Uncharacterized protein
SequenceMDPDPLPLLSLGHVNVSEMMAPPLTVGLALTDSKSSTYALQWALSRFRFTKDDDAPIFLLIHVLTKLLAVPTPMGNHIPIDKVRTDVADAYFKDVHHQAQQMLLLYKNMCHQNKVTCSLATVTSNNSSDQSPFDSPRLLGSNLPSENPKNSSPAHRNRSLTLYDYLNGSTSIYPDKDRRVNSSTGTESSKPSELKGSNVVLRQESLLQGMLSDNKDHISTELEKLRLELRLIQGKHKLVQDESDDASRQASKVDLICYQRMAELAAKRMEEEAQLREIQSRLDKANDNVEKQKAHRYAAEQALNHVQDLVRGEVMQKNMLQVKASRDADKKLRLEKLFVLQGNSYSTFTWEEIDNATSSFADNLKIGSGANGTVYKGYLNHSAVAIKVLHSDDNSSNKHFRQELEVLGKIHHPHLVMLLGACVERGCLVYEYMENGSLEERLRCKSGTAALPWCDRLRIAWEVASALVFLHSSKPNPIIHRDLKPENILLDGNLVSKVGDVGLSTLVSSGSGGSSSTMYKKTALAGTLFYIDPEYQRSGQVSVKSDTYALGMVMLQLLTARAPIGLAEVVERAVEDGKLRDILDENAGWTWAMEEAQEMADLALRCLEMRGKDRPDLKTRVAVDLDRLKRRALPTQPPPEHFICPILKRVMQEPCIASDGYSYERHAIEMWVCDKDVSPVTNVRMPNKTLVPNRSLLTAITAWKSQGGRKPTNKFVTTSPNHL
Length723
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.421
Instability index42.83
Isoelectric point7.62
Molecular weight80789.30
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03123
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.22|      24|     106|     223|     246|       1
---------------------------------------------------------------------------
  223-  246 (40.73/27.06)	EKLRLE.LRLIQGK..HKLVQDESDDA
  330-  356 (33.48/21.02)	KKLRLEkLFVLQGNsySTFTWEEIDNA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.37|      56|     335|     259|     317|       2
---------------------------------------------------------------------------
  259-  317 (81.73/65.95)	QRMAELAAKRMEEEAQLR.EIQSRLdkANDnVEKQKAHRYAAEQALNHVQDLVRGEVMQK
  597-  653 (92.64/63.05)	QEMADLALRCLEMRGKDRpDLKTRV..AVD.LDRLKRRALPTQPPPEHFICPILKRVMQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.60|      23|     136|     418|     453|       3
---------------------------------------------------------------------------
  418-  442 (34.74/22.14)	LLGACVERGclVYEYMENGSLEERL
  557-  579 (35.86/28.00)	LLTARAPIG..LAEVVERAVEDGKL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      85.22|      25|     408|      34|      59|       5
---------------------------------------------------------------------------
   34-   59 (42.51/29.94)	KSSTYALQWAlSRFRFTKD.DDAPIFL
  445-  470 (42.70/25.62)	KSGTAALPWC.DRLRIAWEvASALVFL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03123 with Med32 domain of Kingdom Viridiplantae
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