<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03121

Description Uncharacterized protein
SequenceMQLRLHTPPSVDLFPFPQTARAHQVRSATLLNPRSEQAHRTTPVAGDGSGASAMDGAHGQRQPMSPAISASAVLPQQRQMQLHHHHHHPARSSIADLFTLYLGMNSKQRVEDPTRETSNKLQKRVTAMNRDLPPRDEQFISDFEQLHMQFPDQEQLQAVTESVLISFVLQCSSHAPQSEFLLFATRCLCARGHLRWDSLLPSLLNVVSSVEVPMGQGVSVTTGGPATSSSSAIAVPNAPSFHPSNPTSPLSAMNTIGSPTQSGIDQPIGANVSAIKGAEFSSPGQLGLTARGDQSRRGAEISYLHHLSCRIILAGLESDLKPATHAVIFQHMVNWLVNWDQRPHGVDQADALQLQTLRLERPLHEWMHLCLDVIWILVNEDKCRVPFYELVRSNLQFLENIPDDEALVSIIMEIHRRRDMVCMHMQMLDQHLHCPTFATHRFLSQSYPSIAGESVANLRYSPITYPSVLGEPLHGEDLANSIPKGGLDWERALRCLRHALRTTPSPDWWRRVLLVAPCYRQHPQQSSTPGAVFSPDMIGEAVADRTIELLRLTNSETQCWQDWLLFADIFFFLMKSGCIDFLDFVDKLASRVTNSDQQILRSNHVTWLLAQIIRIEIVMNTLSSDPRKVETTRKIISFHKEDKSLDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDQLQKGKQIDEWWKQMTKASGERMIDFTSLDERAMGMFWVLSFTMAQPACEAVMNWFTSVGVADLIQGPNLQPNERMTMMRETYPLSMSLLSGLSINLCLKLAFQLEETIFLGQNVPSIAMVETYVRLLLITPHSLFRPHFTTLTQRSPSILSKSGVSLLLLEILNYRLLPLYRYHGKSKALMYDVTKIISMIKVKRGEHRLFRLAENLCMNLILSLRDFFLVKKELKGPTEFTETLNRITIISLAITMKTRGIAEVEHIIYLQPLLEQIMATSQHTWSEKTLRYFPPLIRDFLMGRMDKRGQAIQAWQQAETTVINQCNQLLSPSAEPTYVMTYLSHSFPQHRQYLCAGAWMLMNGHLEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLELQRGHQIQDLLSKAITNLAFFIWTHELLPLDILLLALIDRDDDPYALRLVINLLERPELQQRIKAFCTSRSPEHWLKNQPPKRVELQKALGNHLSGKERYPPFFDDIAARLLPVIPLIIYRLIENDATDIADRVLAVYSTFLAFHPLRFTFVRDILAYFYGHLPSKLIVRILNVLGVSTKTPFSESFAQYLASSNSSICPPPEYFANLLFGLVNNVIPPLSCKSKSNPSDAAGSTARTTYNKPYTSSAGGISNSDGQRAFYQNQDPGSYTQLVLETAAIEILSLCVPASQIVSSLVQIIAHVQAMLIQSNSGHGMSGGLGQNSGVPTSSGGGVEPVGANRPNTTASGINASNFVSRSGYSCQQLSVLMIQACGLLLAQLPPEFHTLLYAEAARIIKDCWWLADSSRPVKELDSAVGYALLDPTWASQDNTSTAIGNVVALLHSFFSNLPHEWLESTHTVIKHLRPVNSVAMLRIAFRILGPLLPRLAFARPLFMKTLALLFNVLGDVFGKNSQASPPVEASEIADIIDFLHHAVMYEGQGGPVQSTSKPKLEILTLCGKVMEILRPDVQHLLSHLKTDPNSSVYAATHPKLVQNPS
Length1673
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.08
Grand average of hydropathy-0.087
Instability index46.61
Isoelectric point6.98
Molecular weight187424.52
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03121
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.47|      15|      80|    1320|    1335|       1
---------------------------------------------------------------------------
 1320- 1335 (24.14/14.98)	PyTSSAGGISNSDGQR
 1403- 1417 (27.33/12.67)	P.TSSGGGVEPVGANR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.34|      15|      17|      38|      53|       2
---------------------------------------------------------------------------
   38-   53 (22.69/15.38)	AH.RTTPVAGDGSgASA
   57-   72 (23.66/11.07)	AHgQRQPMSPAIS.ASA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.70|      38|     183|     914|     969|       3
---------------------------------------------------------------------------
  921-  960 (59.97/74.82)	ITIISLAITMKTRGIAEVEHIIYLQPLLeqIMATSQHTWS
 1356- 1393 (63.73/32.72)	IEILSLCVPASQIVSSLVQIIAHVQAML..IQSNSGHGMS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.49|      23|     182|    1435|    1464|       4
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 1440- 1464 (35.70/37.76)	QLSVLMIqaCGLLLAQLPPEFHTLL
 1627- 1649 (39.79/19.96)	KLEILTL..CGKVMEILRPDVQHLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.43|      23|     182|     102|     146|       5
---------------------------------------------------------------------------
   15-   37 (41.44/15.33)	PFPQTARAHQVRSATL...LNPRSEQ
  113-  138 (35.99/33.72)	PTRETSNKLQKRVTAMnrdLPPRDEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.50|      25|     182|     343|     399|       6
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  344-  368 (46.51/75.67)	HGVDQADALQLQTLRLERPLHEWMH
  474-  498 (46.99/11.99)	HGEDLANSIPKGGLDWERALRCLRH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     152.81|      47|     392|     570|     692|       8
---------------------------------------------------------------------------
  645-  692 (75.09/172.67)	LDPNNISPQSILLDFISSSQTLRIWSFNTSIREHLNSDqLQKGKQIDE
 1040- 1086 (77.72/26.88)	LEINSANLARVLREFSPEEVTANIYTMVDVLLHHIQLE.LQRGHQIQD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.70|      26|     267|     238|     272|      12
---------------------------------------------------------------------------
  201-  226 (43.57/23.81)	P.SLLNVVSSVEVPMGQGVSVTTGGPA
  246-  272 (41.12/16.92)	PtSPLSAMNTIGSPTQSGIDQPIGANV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     196.19|      68|     280|     528|     624|      13
---------------------------------------------------------------------------
  528-  611 (89.87/94.31)	TPGAVFSPDMigEAVADRTIELLRLTNSEtqcwqdwLLFADIFFFLM........KSGCIDFlDfVDKLASRVtnsdqQILRSNHVTWLLAQ
  813-  888 (106.32/83.21)	TPHSLFRPHF..TTLTQRSPSILSKSGVS.......LLLLEILNYRLlplyryhgKSKALMY.D.VTKIISMI.....KVKRGEHRLFRLAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.53|      18|     280|     142|     160|      19
---------------------------------------------------------------------------
  142-  160 (29.73/22.22)	DFEQLHMQFPDQeQLQAVT
  419-  436 (38.79/24.76)	DMVCMHMQMLDQ.HLHCPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.64|      13|      15|     441|     453|      21
---------------------------------------------------------------------------
  441-  453 (24.35/12.37)	RFLSQSYPSIAGE
  459-  471 (25.28/13.12)	RYSPITYPSVLGE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03121 with Med23 domain of Kingdom Viridiplantae
Unable to open file!