<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03119

Description Uncharacterized protein
SequenceMDGVGLGVHRRWDTSGSGSQYSFRTSVSSVAEISTEVGVEVSPPPPPPLAAAADKVFVAVAADVKYGKSALQWALQNLAKDGAKVVIAHVHCPAQMIPMMGAKVHYTKMNTKQVNDYRNKEREKAEEKLDEYLLICRKLKVSCEKLIIEEDDIAKGLTDLVALHGVTKLVMGAAADKHYSRKMNTPKSKTALKILEAADPSCKIWFTCKGHLICTREANTTVPAIPPSPAHTVASTLSSSSISSRMRSMSLHPSESEASSSSRSPRHNLNRSRTEVAKYPSQGSGTAPSQLFGHSDQDVSDQPTRTAMVSIDSWDEFERSQNSCYDSSRNSDTVRVSGSAMQQPLYEPDDDHFVSPRKLENSGDDADIYGRLQEALSETQDLKRETYEESTKQLENLYQKEVMHRKITEEALEKQIQETEETERHCNALYDKLHDVEEQKLMVEQHITEMEAVLKEREDRLHDVEEQKFTVEQRITEMQAVLKEHKDKLHDVEEQKLMVEHRITEIRSVLKEREEKLAESKYLLQVLQADKEKLQQERDAAVSESQDLRLKNKQRISMPGEDLNTEFSSYELEQATRGFDQELKIGEGGFGSVYKGTLRNTTVAIKLLHPHSMQGQSEFDQEIAVLSRVRHPNLVTLIGSCREAFGLVYEFLPKGSLEDRLACLNNTPPLTWQVRTRIIYEMCSALSFLHSNKPHPIVHGDLKPANILLDANFVSKLGDFGICRLLIQTNTGAAAAATTRLYRTTTPKGTFAYMDPEFLTTGELTPRSDVYSLGIITLRLLTGKPPQKIAEVVEDAIESGGLHSILDPSAGSWPFVQANQIAHLGLRCAEMSRRRRPDLATDVWKVVEPLMKAASLTAGRPSFVARPGDSPPPSYFVCPILQEEMNDPHIAADGFTYEAEAIKGWLDSGHDTSPMTNLTLEHRELIPNRALRSAILEWQQQRQRHQQQEEDDDFTLQLHGLVLLISQRQEAAMDSDGEEYDAMWSARCSVSSSAGSLQDAGDQWDEQSLAAGEDKVFVAVDEDVEHGKSTFLWALQNLATDGANIVVAHVHSPAQTLSKVHCTRMKPEEISEYLMLAKEEAEKNLDEYALIAKSTGKDMKTDCQKVLIDMDDVAKGLEELITLHGITRLVMGAAADQHYSEEMKEPNSKIALKLMETASPSCKIWFTCNGHLICTREPNENLLAIYVPPAQSNTVPLSMCSISSQMSSIELKNEAPSSEEYTLRSLAQSAMSDWDYIFGDWGRTGYGSLRTDDAISIPEATTLAAIVDDTNKQRSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMNDILNEACTRAELLKKEVDGESSKRRKAEMDLLIALQRVQESEKSYLQEVNQWKETERTLARQRLEIDEMKRRHNTLYDELQDTKKQKLLLEQHISEIKSAAKDYVQEITEYFIQESCEEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKLCLERLDSSKETKRRRKAESKMLSALKKVHDLEHQYLNELKRREAVEETFARQKEEIQETKRELNKIRSRHMTEIKAHEEKLAESIRFIQKIQAKYDKTLHERDTAIAESEKLRQMNRDGASMIATTQIADFSFFELRQATQDFDTALKIGTGRFMNVYKGFIRNTAITVMLLHPQGLQGQLEFHQEVVVLSRLRHPNVMMLIGACPEAFGMVYEFLPNGSLEDQLSCKKNTPPLTWKMRTRIIGEICSALTFIHSQKPHPVVHGNLNPMNILLDANFVSKLHVCQLLRKYNTGNNTSGTSSYIDPEFLSTGELAPRCDVYSFGIIILHLLTGKSPQNITTIVEDAMEKRQLHSIMDTSAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKDASQNFGCKQAFEALSDDAQAPSYFICPILQEVMTDPHIAADGYTYEANAIRNWLDGGNARSVPLKSQSPSIGVHLLYYLRSQKVDAHERNRILTCRQQAESRRASVDAGGGRRAGGLLSPELHSRLLSDHRAPLLSLLRRRDDELRTKIKYHLLALGWTIASKPNLPGLTPRLRYVSLAGSMHACIAIHKHIYMVLN
Length2095
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.540
Instability index53.79
Isoelectric point5.88
Molecular weight236512.49
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03119
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     330.55|      39|      53|     431|     469|       1
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  399-  429 (19.82/ 8.62)	..................QKEVMHRKITEeaLEKQ..........IQETEE.TE..RHCNAL.
  430-  468 (69.48/55.23)	Y.........DKLHDVEEQKLMVEQHITE..MEAV..........LKERED.RL..HDVEEQK
  469-  492 (33.05/21.04)	F.........T....V.......EQRITE..MQAV..........LKEHKD.KL..HDV....
  493-  521 (41.47/28.94)	................EEQKLMVEHRITE..IRSV..........LKEREE.KL.....AESK
  522-  552 (23.48/12.05)	Y.......llQVLQ.ADKEKL..QQ...E..RDAA..........VSESQDlRL..KN.....
 1386- 1419 (43.66/30.99)	Y.........DELQDTKKQKLLLEQHISE..IKSA..........AK...D.YV..QEITE..
 1420- 1466 (32.40/20.43)	YfiqesceeaKKFQKIKMDLLAMLQRVKD..VENL............NRNE.KMqrKDMEE.K
 1485- 1516 (50.04/36.99)	Y.........HELKDVKEQKLCLE.R.....LDSS...........KETKR.RR..K..AESK
 1517- 1559 (17.14/ 6.10)	M.....lsalKKVHDLEHQYL...NELKR..REAVeetfarqkeeIQETKR.EL.........
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|    1792.22|     356|    1043|     557|     915|       2
---------------------------------------------------------------------------
   49-  251 (121.01/76.28)	..................LAAAADKvFVAVAADvKYGkSALQWALQNLAkdgAKVVIAHVHCpAQMIpmmgAKVH.....YTKMntkqvndyrnK...........EREKAEEKLdeYLLICR....KlKVSCeklIIEEDDIAKGLTDLVALHGVTKLVMGAAADKH..YSRKMNTPK....SKTALKILEAAdpSCKIWFTCK.G.......HLICTREA.........nttvpaiPPSPAHTVasTLsssSISSRMRSMSL...................................................................................................................................................................
  557-  915 (641.64/452.39)	SMPGEDLNTEFSSYELEQATRGFDQ.ELKIGEG.GFG.SVYKGTLRNTT...VAIKLLHPHS.MQGQ....SEFDQEIAVLSRV..........RHPNLVT..LIGSCREAFGLV..YEFLPKGSLED.RLAC...LNNTPPLTWQVRTRIIYEMCSALSFLHSNKPHPIVHGDLKPANILLDANFVSKLGDFG..ICRLLIQTNTGAAAAattRLYRTTTP.KGTFA.YM.......DPEFLTTG..EL...TPRSDVYSLGI.........ITLRLLTGKPPQKIAEVVEDAIESGGLHSILDPSAGSWPFVQANQIAHLGLRCAEMSRRRRPDLATDVWKVVEPLMKAASLTAG.RPSFVARPGDSPPP.SYFVCPILQEEMNDPHI...AADGFT...YEAE.....AIKGWLDSGHDTS.PM
  991- 1345 (413.20/283.35)	SSSAGSLQDAGDQWDEQSLAAGEDKvFVAVDEDvEHGkSTFLWALQNLAtdgANIVVAHVHSpAQTL....SKVH.....CTRM..........K.PEEISeyLMLAKEEAEKNLdeYALIAKSTGKDmKTDCqkvLIDMDDVAKGLEELITLHGITRLVMGAAADQH..YSEEMKEPN....SKIALKLMETAspSCKIWFTCN.G.......HLICTREPnENLLAiYV.......PPAQSNTV..PLsmcSISSQMSSIELkneapsseeYTLRSLAQSAMSDWDYIFGDWGRT.GYGSLRTDDAISIP..EATTLAAI....VDDTNKQR........SVMHSPQESDSVNFS.SPACDPQQEEEEPNlDEDMNDILNEACTRAELlkkEVDGESskrRKAEmdlliALQ.............
 1617- 1962 (616.37/427.33)	SMIATTQIADFSFFELRQATQDFDT.ALKIGTG.RFM.NVYKGFIRNTA...ITVMLLHPQG.LQGQ....LEFHQEVVVLSRL..........RHPNVMM..LIGACPEAFGMV..YEFLPNGSLED.QLSC...KKNTPPLTWKMRTRIIGEICSALTFIHSQKPHPVVHGNLNPMNILLDANFVSKL...H..VCQLLRKYNTGNNTS.............GTSS.YI.......DPEFLSTG..EL...APRCDVYSFGI.........IILHLLTGKSPQNITTIVEDAMEKRQLHSIMDTSAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKDASQNFGcKQAFEALSDDAQAP.SYFICPILQEVMTDPHI...AADGYT...YEAN.....AIRNWLDGGNARSvPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.72|      10|      23|     292|     301|       3
---------------------------------------------------------------------------
  292-  301 (18.36/10.20)	FGHSDQDVSD
  317-  326 (19.36/11.17)	FERSQNSCYD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03119 with Med32 domain of Kingdom Viridiplantae
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