<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03118

Description Uncharacterized protein
SequenceMDGVGLGVHRRWDTSGSGSQYSFRTSVSSVAEISTEVGVEVSPPPPPPLAAAADKVFVAVAADVKYGKSALQWALQNLAKDGAKVVIAHVHCPAQMIPMMGAKVHYTKMNTKQVNDYRNKEREKAEEKLDEYLLICRKLKVSCEKLIIEEDDIAKGLTDLVALHGVTKLVMGAAADKHYSRKMNTPKSKTALKILEAADPSCKIWFTCKGHLICTREANTTVPAIPPSPAHTVASTLSSSSISSRMRSMSLHPSESEASSSSRSPRHNLNRSRTEVAKYPSQGSGTAPSQLFGHSDQDVSDQPTRTAMVSIDSWDEFERSQNSCYDSSRNSDTVRVSGSAMQQPLYEPDDDHFVSPRKLENSGDDADIYGRLQEALSETQDLKRETYEESTKRRNAERNLISALQKASHFASKVKELENLYQKEVMHRKITEEALEKQIQETEETERHCNALYDKLHDVEEQKLMVEQHITEMEAVLKEREDRLHDVEEQKFTVEQRITEMQAVLKEHKDKLHDVEEQKLMVEHRITEIRSVLKEREEKLAESKYLLQVLQADKEKLQQERDAAVSESQDLRLKNKQRISMPGEDLNTEFSSYELEQATRGFDQELKIGEGGFGSVYKGTLRNTTVAIKLLHPHSMQGQSEFDQEIAVLSRVRHPNLVTLIGSCREAFGLVYEFLPKGSLEDRLACLNNTPPLTWQVRTRIIYEMCSALSFLHSNKPHPIVHGDLKPANILLDANFVSKLGDFGICRLLIQTNTGAAAAATTRLYRTTTPKGTFAYMDPEFLTTGELTPRSDVYSLGIITLRLLTGKPPQKIAEVVEDAIESGGLHSILDPSAGSWPFVQANQIAHLGLRCAEMSRRRRPDLATDVWKVVEPLMKAASLTAGRPSFVARPGDSPPPSYFVCPILQEEMNDPHIAADGFTYEAEAIKGWLDSGHDTSPMTNLTLEHRELIPNRALRSAILEWQQQRQRHQQQEEDDDFTLQLHGLVLLISQRQEAAMDSDGEEYDAMWSARCSVSSSAGSLQDAGDQWDEQSLAAGEDKVFVAVDEDVEHGKSTFLWALQNLATDGANIVVAHVHSPAQTLSKVHCTRMKPEEISEYLMLAKEEAEKNLDEYALIAKSTGKDMKTDCQKVLIDMDDVAKGLEELITLHGITRLVMGAAADQHYSEEMKEPNSKIALKLMETASPSCKIWFTCNGHLICTREPNENLLAIYVPPAQSNTVPLSMCSISSQMSSIELKNEAPSSEEYTLRSLAQSAMSDWDYIFGDWGRTGYGSLRTDDAISIPEATTLAAIVDDTNKQRSVMHSPQESDSVNFSSPACDPQQEEEEPNLDEDMNDILNEACTRAELLKKEVDGESSKRRKAEMDLLIALQRVQESEKSYLQEVNQWKETERTLARQRLEIDEMKRRHNTLYDELQDTKKQKLLLEQHISEIKSAAKDYVQEITEYFIQESCEEAKKFQKIKMDLLAMLQRVKDVENLNRNEKMQRKDMEEKIARQRMEIEETKRQRDELYHELKDVKEQKLCLERLDSSKETKRRRKAESKMLSALKKVHDLEHQYLNELKRREAVEETFARQKEEIQETKRELNKIRSRHMTEIKAHEEKLAESIRFIQKIQAKYDKTLHERDTAIAESEKLRQMNRDGASMIATTQIADFSFFELRQATQDFDTALKIGTGRFMNVYKGFIRNTAITVMLLHPQGLQGQLEFHQEVVVLSRLRHPNVMMLIGACPEAFGMVYEFLPNGSLEDQLSCKKNTPPLTWKMRTRIIGEICSALTFIHSQKPHPVVHGNLNPMNILLDANFVSKLHVCQLLRKYNTGNNTSGTSSYIDPEFLSTGELAPRCDVYSFGIIILHLLTGKSPQNITTIVEDAMEKRQLHSIMDTSAGSWPFVQANQLAHLGLRCANLSGRHRPDLTGEVWGVIKPLLKDASQNFGCKQAFEALSDDAQAPSYFICPILQEVMTDPHIAADGYTYEANAIRNWLDGGNARSVPLKSQSPSIGVHLLYYLRSQKVDAHERNRILTCRQQAESRRASVDAGGGRRAGGLLSPELHSRLLSDHRAPLLSLLRRRDDELRTKIKYHLLALGWTIASKPNLPGLTPRLRYVSLAGSMHACIAIHKHIYMVLN
Length2118
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-0.543
Instability index53.79
Isoelectric point5.96
Molecular weight239120.46
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03118
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     316.60|      39|      54|     454|     492|       1
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  413-  452 (32.59/17.30)	..............KVKELENlyQ.......KEVMH......................RKITEeaLEKQI....QETEETERHCNA.............L.
  453-  491 (70.85/47.71)	Y....D........KLHDVEE..Q.......KLMVE......................QHITE..MEAVL....KEREDRLHDVEE.............QK
  492-  515 (34.35/18.70)	F....T............................VE......................QRITE..MQAVL....KEHKDKLHDV.................
  516-  544 (43.71/26.15)	...................EE..Q.......KLMVE......................HRITE..IRSVL....KEREEKL...AE.............SK
 1409- 1457 (41.22/24.17)	Y....D........ELQDTKK..Q.......KLLLE......................QHISE..IKSAA....K...DYVQEITEyfiqesceeakkfQK
 1458- 1506 (23.36/ 9.97)	I....KmdllamlqRVKDVENlnR.......NEKMQ......................RK..D..MEEKIarqrMEIEETKRQRDE...............
 1508- 1539 (49.25/30.55)	Y....H........ELKDVKE..Q.......KLCLE.......................R.....LDSS.....KETKRRRK..AE.............SK
 1540- 1603 (21.26/ 8.30)	MlsalK........KVHDLEH..QylnelkrREAVEetfarqkeeiqetkrelnkirsRHMTE.....I.....KAHEEKL...AE.............S.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     191.85|      41|      78|     804|     844|       2
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  804-  839 (60.52/36.85)	...............LTGKPPQ...KIAEVVEDAIESGGLHSILDPSAGSWPFV
  840-  887 (49.84/28.95)	QANQIahlglrcaemSRRRRPDlatDVWKVVEPLMKAAS....L..TAGRPSFV
 1849- 1884 (60.12/36.55)	...............LTGKSPQ...NITTIVEDAMEKRQLHSIMDTSAGSWPFV
 1885- 1923 (21.37/ 7.90)	QANQLahlglrcanlSGRHRPDltgEVWGVIKPLLKDAS...............
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.31|      15|      78|     656|     670|       3
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  656-  670 (28.80/17.11)	NLVTLIGSCREAFGL
 1716- 1730 (31.51/19.40)	NVMMLIGACPEAFGM
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|    1024.41|     289|    1057|     546|     938|       4
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  546-  938 (506.21/410.82)	LLQVLQADKEKLQQERDAAVSESQDLRLKNKQRISMPGEDLNTEFSSYELEQATRGFDQELKIGEGGFGSVYKGTLRNTTVAIKLLHPHSMQGQSEFDQEIAVLSRVRHPnlvtligscreafglVYEFLPKGSLEDRLACLNNTPPLTWQVRTRIIYEMCSALSFLHSNKPHPIVHGDLKPANILLDANFVSKLgdfGICRLLIQTNTGAAAAattrlyrtttpkGTFAYMDPEFLTTGELTPRSDVYSLGIITLRLltgkppqkiaevvedaiesgglhsildpsagswpfvqanqiAHLGLRCAEM.srrrrpdlatdvwkvveplmkaasltagrpsfvARPGDSPPPSYFVCPILQEEMNDPHIAADGFTYEAEAIKGWLDSGHDTS.PM
 1606- 1985 (518.19/385.95)	FIQKIQAKYDKTLHERDTAIAESEKLRQMNRDGASMIATTQIADFSFFELRQATQDFDTALKIGTGRFMNVYKGFIRNTAITVMLLHPQGLQGQLEFHQEVVVLSRLRHPnvmmligacpeafgmVYEFLPNGSLEDQLSCKKNTPPLTWKMRTRIIGEICSALTFIHSQKPHPVVHGNLNPMNILLDANFVSKL...HVCQLLRKYNTGNNTS............GTSSYIDPEFLSTGELAPRCDVYSFGIIILHLltgkspqnittivedamekrqlhsimdtsagswpfvqanqlAHLGLRCANLsgrhrpdltgevwgvikpllkdasqnfgckqafeALSDDAQAPSYFICPILQEVMTDPHIAADGYTYEANAIRNWLDGGNARSvPL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     239.25|      38|      72|      76|     113|       5
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   76-  113 (70.05/43.74)	QNLAKDGAKVVIAHVHCPAQMIPMMGAKVHYT.K.MNTKQ
  151-  187 (59.20/35.79)	DDIAK.GLTDLVA.LHGVTKLVMGAAADKHYSrK.MNTPK
 1059- 1092 (58.13/35.01)	QNLATDGANIVVAHVHSPAQTL....SKVHCT.R.MKPEE
 1134- 1169 (51.86/30.41)	DDVAK.GLEELIT.LHGITRLVMGAAADQHYS.EeMKEP.
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     134.09|      38|      51|     284|     322|       6
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  284-  322 (64.84/48.38)	SGTAPSQLFGHSDQDVSDQPtRTAMVSIDSWDEFERSQN
  337-  374 (69.25/47.03)	SGSAMQQPLYEPDDDHFVSP.RKLENSGDDADIYGRLQE
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     454.81|     189|     982|       1|     272|       7
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    1-  150 (134.11/99.23)	...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................MDGVGLGVHRRWDTS..GSGSQY....SFRTSVSSVAEISTEVGvevSPPPPPPLAAAADKVFVAVAADVKYGKSALQWALqnlakdgakvviahvhcpaqmipmmgakvhytkmntkqVNDYRNKEREKAEEKLDEYLLIC....RKLKVSCEKLIIEE
  188-  272 (96.08/77.72)	SKTALKILEAADPSCKIWFTCKGHLICTREANTTVPAI..PPSPAHTVasTLSSSSISSRMRSMSLHpseSEASSSSRSPRHNLNRS....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
  981- 1133 (122.86/83.05)	.......................................................................................rtevakypsqgsgtapsqlfghsdqdvsdqptrtamvsidswdefersqnscydssrnsdtvrvsgsamqqplyepdddhfvsprklensgddadiygrlqealsetqdlkretyeestkrrnaernlisalqkashfaskvkelenlyqkevmhrkiteealekqiqeteeterhcnalydklhdveeqklmveqhitemeavlkeredrlhdveeqkftveqritemqavlkehkdklhdveeqklmvehriteirsvlkereeklaeskyllqvlqadkeklqqerdaavsesqdlrlknkqrismpgedlntefssyeleqatrgfdqelkigeggfgsvykgtlrnttvaikllhphsmqgqsefdqeiavlsrvrhpnlvtligscreafglvyeflpkgsledrlaclnntppltwqvrtriiyemcsalsflhsnkphpivhgdlkpanilldanfvsklgdfgicrlliqtntgaaaaattrlyrtttpkgtfaymdpeflttgeltprsdvyslgiitlrlltgkppqkiaevvedaiesgglhsildpsagswpfvqanqiahlglrcaemsrrrrpdlatdvwkvveplmkaasltagrpsfvarpgdspppsyfvcpilqeemndphiaadgftyeaeaikgwldsghdtspmtnltlehrelipnralrsailewqqqrqrhqqqeedddftlqLHGLVLLISQRQEAAmdSDGEEYdamwSARCSVSSSAGSLQDAG...DQWDEQSLAAGEDKVFVAVDEDVEHGKSTFLWAL....qnlatdganivvahvhspaqtlskvhctrmkpeeISEYLMLAKEEAEKNLDEYALIAkstgKDMKTDCQKVLIDM
 1171- 1252 (101.75/67.48)	SKIALKLMETASPSCKIWFTCNGHLICTREPNENLLAIyvPPAQSNTV..PLSMCSISSQMSSIELK...NEAPSSEEYTLRSLAQS....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.53|      23|     960|     383|     405|       9
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  383-  405 (38.98/22.26)	KRETYEESTKRRNAERNLISALQ
 1346- 1368 (37.47/21.12)	KKEVDGESSKRRKAEMDLLIALQ
 1374- 1394 (33.08/17.79)	EKSYLQEVNQWKETERTL..ARQ
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03118 with Med32 domain of Kingdom Viridiplantae
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