<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03116

Description Uncharacterized protein
SequenceMYLSAFSSSASSHGSGDSEARDSSTVVAVDRDKNSQQAAKWAVDRLLARGSVLQLVHVKPQQNAEAGADAEMQQMFISYRGYCARKGMQLKEVILDGSDISKAIVEYATSNAITDIVVGASTRNTFIRKFRNPDVPTCLMKMVPDYCTVHVIHKGKAIQVKAAKAPAPFTTLPPKQYSQSSIESDGYPRSRGDWKKISNQSSPKAKRPSVDRLSGFAKAPTRERPLSGARSAPPKDFDDYIDFIAPPRPSVTRSSFSDDVDFPLSLELPSMDFGDSLELSLSASMSMESLSSAGKDVETEMRRLRLELKQTMEMYNSACKEAIDAKQKAAQMHQMKMEESKKYQELRNAEEEALALVQMEKAKCRAALEAAEAAQRIAELEAQKRLRAEWKAKREAEERKRATEAMNNTDLRYRRYSIDDIEAATHKFDKALKIGEGGYGPVYKAVMDHTNVAIKILRPDASQGRKQFQQEIEVLSCMRHPNMVLLLGACPEYGCLVYEYMDYGSLEDRLCRRGKTLPIPWNIRFRIAADIATGLLFLHQAKPEPLVHRDLKPANILLDRNYVSKISDVGLARLVPQSAAAAEATQYRMTSTAGTFCYIDPEYQQTGMLTTMSDIYSLGILLLQIITARSPMGLTHHVESAIERGTFQEVLDPMVTDWPVEEALVFAKLALRCAELRKKDRPDLGKEILPELNRLRCLGQEYDASKVSSTSTTCSSSAPYSFGGDDVSTP
Length730
PositionTail
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.07
Grand average of hydropathy-0.436
Instability index49.91
Isoelectric point8.06
Molecular weight81245.79
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03116
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.05|      17|     294|     367|     385|       1
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  348-  365 (22.08/ 7.06)	NAEEEALALVQMEkAKCR
  369-  385 (25.97/16.24)	EAAEAAQRIAELE.AQKR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.88|      13|      35|     225|     239|       4
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  225-  239 (21.33/20.58)	PLSgaRSAPPKDFDD
  263-  275 (25.56/16.43)	PLS..LELPSMDFGD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.33|      18|      22|     279|     300|       5
---------------------------------------------------------------------------
  279-  296 (29.27/24.66)	LSLSASMSMESLSSAGKD
  304-  321 (32.06/16.30)	LRLELKQTMEMYNSACKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     263.22|      85|     461|      44|     134|       8
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   44-  134 (132.16/112.66)	DRLLARGSVLQLvhvkPQQ.NAEAGADAEMQQMFISYRG..YCARKGMQLKEVILDGSDISKA.......IVEYATSNAITDIVVGASTRNTFIrkFRNPD
  508-  602 (131.05/95.30)	DRLCRRGKTLPI....PWNiRFRIAADIATGLLFLHQAKpePLVHRDLKPANILLDRNYVSKIsdvglarLVPQSAAAAEATQYRMTSTAGTFC..YIDPE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03116 with Med32 domain of Kingdom Viridiplantae
Unable to open file!