<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03110

Description Uncharacterized protein
SequenceMTLTHTYPAPSHGPRQERGQSRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAYQPSSVPPPIVQSWGTAPGQNVPLVQPGHQPMSSSATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERADASTEWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPANQSSTTIMGAPSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIPSVASDAGISRANNEYPSLASTADTQNGASAEELEEAKKTMAVPGKINVTPVEDKTSEEEPVTYANKLEAKNAFKALLESSNVESDWTWDQAMRVIINDKRYGALKTLGERKQAFNEYLNQRKKLEAEERRIKQRKARDDFLAMLEESKELTSSTRWSKAITMFEDDERFSAVERPREREDLFESYLMELQKKERARAAEEHKRHIAEYRAFLESCEFIKTSTQWRKVQERLEDDERCSRLEKIDRLEIFQEYIRDLEKEEEEHKRIHKEQVRRQERKNRDEFRKMLEEHVAEGMLTAKTRWRDYCAQVKDSSVYLAVASNISGSMPKDLFEDVMEELEKQYQDDKARIKEAVKSGKIPMTTSWTLEDFETAVTEDDTLKGITNINMKLIFDDQVERLREKEVKEAKKRQRLGENFSDLLYSIKEISASSTWDDSKALFEDSQEYKALDSETYSRELFEECVVHLKERLKEKERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
Length955
PositionUnknown
OrganismOryza barthii
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> Liliopsida> Poales> Poaceae> BOP clade> Oryzoideae> Oryzeae> Oryzinae> Oryza.
Aromaticity0.06
Grand average of hydropathy-1.261
Instability index54.31
Isoelectric point6.14
Molecular weight109766.50
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03110
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     144.79|      27|      27|     788|     814|       1
---------------------------------------------------------------------------
  587-  604 (23.94/ 7.19)	K.RIH.KEQ.VRRQE..RKN......RD.E...
  788-  811 (35.58/14.45)	KERLKEKER.LREEEKARKE....KERE.E...
  812-  836 (37.53/15.66)	KERRKEKEK....KEKERKE....KERDkEKER
  893-  924 (25.12/ 7.93)	KDDSKKSRRhSSDRKKSRKHthasDSDS.ENRH
  925-  944 (22.61/ 6.37)	KRHKKDRD.......SSRRN....GTRD.DLE.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     177.90|      40|      40|     150|     189|       2
---------------------------------------------------------------------------
  150-  189 (75.60/52.07)	SS...DWQEHTSADGKKYYYNKKTRQSSWEKPAELMTPLERAD
  191-  230 (71.66/48.90)	ST...EWKEFTTQEGRKYYYNKVTKQSKWTIPDELKIARELAE
  233-  263 (30.63/15.88)	SNprpDQETETTAGAPSGPTSNSVEPSS..VPA..........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     175.89|      37|      40|      14|      51|       3
---------------------------------------------------------------------------
   14-   51 (74.45/48.35)	PRQ...ERGQS.RPP....MMGSSVPP...QNLGpPMPMQFRPVI...HQQQ
   52-   85 (56.71/31.41)	PPQ.fmQPGQQfRP......VGQAMPG...ANIG..MPGQM.P.....HFQQ
   86-  132 (44.72/23.22)	PTQhlpHSGQV..PPasqaYQPSSVPPpivQSWG.TAPGQNVPLVqpgHQ..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     144.96|      23|      23|     433|     455|       4
---------------------------------------------------------------------------
  348-  370 (24.62/10.63)	QNGA...SAEELEEAKKTM...AVPGKIN
  411-  432 (22.16/ 8.83)	WDQA...MRVIIND.KRYG...ALKTLGE
  433-  455 (36.18/19.08)	RKQA...FNEYLNQRKKLE...AEERRIK
  456-  481 (19.13/ 6.62)	QRKArddFLAMLEESKELT...SSTRWSK
  501-  523 (18.45/ 6.12)	REDL...FESYLMELQKKErarAAE...E
  524-  542 (24.43/10.49)	HKRH...IAEY...RAFLE...SCE.FIK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.04|      25|      29|     837|     865|       5
---------------------------------------------------------------------------
  837-  865 (33.85/25.31)	EKDKGKDRSRKDEmdiDAVDaDSHGSKDK
  868-  892 (44.19/21.13)	EKDKEKKHKRRHH...DTAD.DVSSERDE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.17|      12|      65|     486|     497|       6
---------------------------------------------------------------------------
  486-  497 (21.76/12.43)	FEDDERFSAVER
  554-  565 (21.41/12.12)	LEDDERCSRLEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.43|      26|      27|     285|     311|      10
---------------------------------------------------------------------------
  266-  300 (42.80/20.35)	SSTTIM.GAPS..tldaaansvPP...GAGPSH.NMENTSSS
  301-  342 (27.63/14.80)	SNTAMQnGGPStvvtpvisteiPSvasDAGISRaNNEYPSLA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03110 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERLREEEKARKEKEREEKERRKEKEKKEKERKEKERDKEKEREKDKGKDRSRKDEMDIDAVDADSHGSKDKKREKDKEKKHKRRHHDTADDVSSERDEKDDSKKSRRHSSDRKKSRKHTHASDSDSENRHKRHKKDRDSSRRNGTRDDLEDGELGEDGEIH
2) MTLTHTYPAPSHGPRQERGQSRPPMMGSSVPPQNLGPPMPMQFRPVIHQQQPPQFMQPGQQFRPVGQAMPGANIGMPGQMPHFQQPTQHLPHSGQVPPASQAYQPSSVPPPIVQSWGTAPGQNVPLVQPGHQPMSSSATMPSINSSETSSSDWQEHTSADGKKYYYNKKTRQS
3) TIPDELKIARELAEKASNPRPDQETETTAGAPSGPTSNSVEPSSVPANQSSTTIMGAPSTLDAAANSVPPGAGPSHNMENTSSSSNTAMQNGGPSTVVTPVISTEIPSVASDAGISRANNEYPSLASTADTQNGASAEELEEAKKTMAVPGKINVTPVEDKTSEEEPVTYAN
795
1
217
955
173
388










Molecular Recognition Features






MoRF SequenceStartStop




NANANA