<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03104

Description Uncharacterized protein
SequenceMTSSLSSNPVIAEERPTETSTDLTVNSLSTEAPEKKVRKAYTITKSRESWTEGEHDKFLEALQLFDRDWKKIEDFVGSKTVIQIRSHAQKYFLKVEKNGTLAHVPPPRPKRKAAHPYPQKASKNAQMSLHVSMSFPTQINNVPGYTSWDDDTSALLNIAVSEVILPKDELTTLCGGEGKHSHLHSFFFFCLAVELLHMVKVHMLNMLLVSDVIESNGSTSEGSPSASCIASSSRTVSDSKTANQAPSMHGLPDFAEVYNFIGSVFDPDSKGRMKKLKEMDPINFETVLLLMRNLTVNLSNPDFEPALLAGVVRDLWSRTKQVIYLLGELLAHNNCLSAIKCCLRLLSEENITDQEGNMAVLVRTSSHQIGQSPARLGLTGPGSPSVQNLTPSRHGHPTSSSSSQSHHQQQQIQQPPPNLPPSSSVAAASSSSSAPVSSSALLSLLPPLPRAQALLQQMAVLSSKLFDVSPNRALWLSAFRGSLPSFLTSSHSLPPPPPLEIPNPSSTKEILSQFNSLQTQLFEAVTELQEILDLQDAKQKLAREIKSKDSSLLAFANKLKEAERVLDMLVDDYSDYRKPKRTKTEDEENDNESSTTVSSQLKLKDILAYAHKISYTTFAPPEFGAGQAPLRGALPPAPQDEQMRASQLYAFADLDIGLPKTVENIEKKVEALMEPPPPPPDLSAIQGLLPPNIAVPSGWKPGMPVELPKDWRLPAPPPGWKPGDPVVLPPELVPAPRAQEQQQVRPPQGLHRPPDVIHVREVQLDIMEDDSSEYSSEESSDDEE
Length784
PositionMiddle
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.424
Instability index61.07
Isoelectric point5.63
Molecular weight86098.52
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
DNA binding	GO:0003677	IEA:InterPro
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03104
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     345.70|      80|     180|     429|     511|       1
---------------------------------------------------------------------------
  389-  429 (28.41/ 7.96)	.......................................................LTPSRHGHP......TSSSSSQShhqqqqIQQPPP..............NLP.PSSSVAAAS
  430-  512 (128.25/77.83)	SSSSAPvsSSALLSLLPPLPRA...QALLQQMA.VLSSKLF.....DVSPNRAlWLSAFRGSLP......SFLTSSHS......LPPPPP.............LEIPNPSSTKEILS
  513-  592 (68.42/33.03)	QFNSL...QTQLFEAVTELQEIldlQDAKQKLArEIKSK.......DSS......LLAFANKLKeaervlDMLVDDYS.....dYRKPKR.............TKTEDEENDNE...
  624-  680 (69.37/33.60)	GAGQAP.....LRGALPPAPQD...E....QMR...ASQLYafadlDIGLPKT..VENIEKKVE......ALMEP..........PPPPP...........................
  683-  736 (51.25/22.10)	.........SAIQGLLPP............NIA.VPSG................W....KPGMP......VELPKDWR......LPAPPPgwkpgdpvvlppeL.VPAP........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.67|      25|      25|      85|     109|       2
---------------------------------------------------------------------------
   85-  109 (46.57/26.41)	RSHAQKYFLKVEKNGTLA.HVPPPRP
  111-  136 (42.10/23.19)	RKAAHPYPQKASKNAQMSlHVSMSFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     182.96|      59|     268|      22|      82|       4
---------------------------------------------------------------------------
   22-   82 (93.43/74.46)	DLTVNsLSTEAPEKK.....VRKAYTITKsRESWTEGE...HDKFLEALQLFDR..DWKKIEDFVGSKTVI
  293-  361 (89.53/62.00)	NLTVN.LSNPDFEPAllagvVRDLWSRTK.QVIYLLGEllaHNNCLSAIKCCLRllSEENITDQEGNMAVL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.98|      11|      27|     721|     731|       7
---------------------------------------------------------------------------
  721-  731 (21.07/ 9.10)	KPGDPVVLPPE
  745-  755 (22.91/10.51)	RPPQGLHRPPD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03104 with Med4 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) PVELPKDWRLPAPPPGWKPGDPVVLPPELVPAPRAQEQQQVRPPQGLHRPPDVIHVREVQLDIMEDDSSEYSSEESSDDEE
2) QSPARLGLTGPGSPSVQNLTPSRHGHPTSSSSSQSHHQQQQIQQPPPNLPPSSSVAAASS
704
371
784
430










Molecular Recognition Features






MoRF SequenceStartStop




1) QGLHRPPDVIHVREVQLDIMEDDSSEY
748
774