<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03102

Description Uncharacterized protein
SequenceMKPSSASLDSWREYFRRGDSDIFGIIDHAIMVAAADCPNRFKSRRDKIAELLFSCRVNRCTGCDHLELSVPGGDGEEEANIDDAAVDGGEEAGGSKESKANSSRGDNGNHINQVVGNYSYDDEAEALSDAIEEFSMVSKEVCRIKEILLNKDHESHSVILESLRKLKLMSLNVDILKSTVIGKAVNGLRKHGSDKIRQLAKTLIAEWKEIVDQWVGTTKEIAGAEGTPESANPSVVDEEDDEEEEAFPSLPYDVDIFTPEANGFEMLNGDFFDSLDFDGNLCDSGDYNKSREHERRPQNVAKRRPEGTQQTRIQDAPFRSIKPSSHADGTRRPLKQNTEHRMKNEMVSGHKSEKPMIPGRKPLARPPQEKLKGLDADAKFEFAKRKLQESYQHHENAKKQRTIQVLETIPKQGNAQKPQLKRPGMNNRNWANGRK
Length435
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.898
Instability index47.02
Isoelectric point5.84
Molecular weight48767.81
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03102
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.12|      15|      15|     385|     399|       1
---------------------------------------------------------------------------
  385-  399 (26.78/19.51)	RKLQ..ESYQHHENAKK
  401-  417 (21.34/14.13)	RTIQvlETIPKQGNAQK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.04|      17|      20|      72|      90|       3
---------------------------------------------------------------------------
   72-   90 (25.55/17.37)	GGDGEEEANidDAAVDGGE
   93-  109 (30.49/14.94)	GGSKESKAN..SSRGDNGN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.21|      21|      21|     132|     152|       4
---------------------------------------------------------------------------
  132-  152 (34.43/29.90)	EEFSMVSKEVCRIKEILLNKD
  154-  174 (32.78/28.10)	ESHSVILESLRKLKLMSLNVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.07|      14|      21|     304|     319|       5
---------------------------------------------------------------------------
  306-  319 (24.35/13.90)	EGTQQTRIQDAPFR
  328-  341 (24.71/10.44)	DGTRRPLKQNTEHR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03102 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CDSGDYNKSREHERRPQNVAKRRPEGTQQTRIQDAPFRSIKPSSHADGTRRPLKQNTEHRMKNEMVSGHKSEKPMIPGRKPLARPPQEKLKGLDADAKFEFAKRKLQESYQHHENAKKQRTIQVLETIPKQGNAQKPQLKRPGMNNRNWANGRK
2) EEEANIDDAAVDGGEEAGGSKESKANSSRGDNG
282
76
435
108










Molecular Recognition Features






MoRF SequenceStartStop




1) AFPSLPYDVDIF
2) AKFEFAKR
3) AQKPQLKRPGM
4) EKPMIPGRKPLARPP
5) IQVLETIPK
6) LDSWREYFRR
246
378
415
353
403
8
257
385
425
367
411
17