<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03101

Description Uncharacterized protein (Fragment)
SequenceFDRVLGGEYEEGKITLRRTKSSTTPPPPRELPCYITSFLTIVILGVGLNAKSWMVYQPQPPPSSDSSPSPSDRFPGITSLETPSNNQNLEIEDITIAYRLPLRHVSRGCHHHRGGAGDSVDTMKESRRHGAAGMLAGLSHFPLHRSLYHQRYELQDSTFQELSRRFDFKPWRWLVVHLGRLQCALVAHLPRLQLALVAHLGRLQRALVVSLGNPKRSLVLDHQYRPTCVAPLQLYGPTYDACTLRCMDLEMLYPCPSLSYVTATKNVEAVGDAPAISEPMVSVYTVRCPPIVHLSGLDRLCHRDMRRLRHQEVIPKKFIHSTCFSFCLLKTYMRSNRDIILALIEKPEPVTEDIPLLPLTTQPTVSPSIQNQSDAVAKKEEEESCRVLDMSGVVRGDQKVLYRPGSFTRVRSNIDEVGYN
Length420
PositionHead
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.304
Instability index63.06
Isoelectric point8.86
Molecular weight47354.98
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03101
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.49|      20|      33|     172|     191|       1
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  172-  189 (32.21/19.79)	..RW....LVV.HLGRLQCALVAHL
  190-  211 (27.21/15.67)	PR..lqlaLVA.HLGRLQRALVVSL
  214-  230 (22.07/11.43)	PKRS....LVLdHQYRPTC..VA..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.34|      25|      39|      99|     128|       3
---------------------------------------------------------------------------
   99-  128 (37.03/32.95)	RLPLrHvsRGCHHHRGGAGDSvdTMKE.SRR
  140-  165 (45.31/23.62)	HFPL.H..RSLYHQRYELQDS..TFQElSRR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03101 with Med28 domain of Kingdom Viridiplantae
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