<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03096

Description Uncharacterized protein
SequenceMAMKKPKVEQGEEAKTLSTQIPDDKEGLIDFMDQRANSIEALKDQLSNLERKLAEERRLMADAEAKFLRVDRVENKKNVPGKTGSLLGIAEFWTERDKVKKTATNGTSTPHPPSEMKPLKMPSIILPPSFKRKASAPARPEASETAQHVATTDSDVPKEVRNGSETKRSRTVVPNEVVRETQSQAKPRIRVSSNIPGQAAQQEKSEFHGHEELIALIGRSSLRATIESRTLAMLPSGHTKRMRSLALSPSNRDLFATSALDGVVHFWKLQSDRSSATLFKTINRVEVDQKRWAEDIAWHPHKSALFSVYTADEGHAQISALYLNEARETCESKFLKDRPHIKGLINRIMFTPWDDPCFITGGCDHAVVLWREQCENNAWKSRLLHKDLHTSAVMGVAGMRHNNLVLSCGDDRRFVGFDAREEKVTFKHRLDNKCTNLLPNPRDVNLVMLQTRQLDRQLRLYDVRLPQTELFSFGWKQESSESQSALINQSWSPDGLHISSGSSDPAIHIFDIRYNAASPSLSIKAHKKRVFKAEWHSSNQLLVSISSDLEIGIHKLCPKTQFQLLWQEPVAIKSTVFGSPQNGIVLNHMIFRLRLFSPGDYSQPSPWACLPSSVSVSSMASPEEMVDASETPSTPKSTYKDPDVGRQRFLLELEFIQCLANPTYIHYLAQNRYFEDEAFIEYLKYLQYWQRPEYIKFIMYPHCLYFLELLQNPNFRSAMAHPANKELAHRQQFYYWKNYRNNRLKHILPRPLPEPVAPQPPPVPSSSLPPAPPATAAPSPSPMQYNNMLAKNETRNMVSAGIDRRKRKKGP
Length811
PositionMiddle
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.591
Instability index58.44
Isoelectric point9.27
Molecular weight92195.02
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03096
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     197.24|      44|      46|     327|     370|       1
---------------------------------------------------------------------------
  223-  255 (35.38/18.82)	............................RATIESRTLAMLPsgHTKRM.RSLALSPSNRDLF
  256-  306 (48.79/28.79)	ATSALDGVVHFWklqsdrssatlfktinRVEVDQK...........RWAEDIAWHPHKSALF
  309-  358 (69.10/43.89)	YTADEGHAQI..........salylneaRETCESKFLKDRP..HIKGLINRIMFTPWDDPCF
  359-  388 (43.97/25.20)	ITGGCDHAVVLW................REQCENNAWKSRL..LHKDL..............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     163.45|      36|      46|     688|     723|       2
---------------------------------------------------------------------------
  648-  672 (33.37/16.24)	..........RFLLE...LEFIQCLANPTYIHYLAQNR
  688-  723 (70.14/42.72)	YWQ..RPEYIKFIMYPHCLYFLELLQNPNFRSAMAHPA
  735-  771 (59.94/35.38)	YWKnyRNNRLKHIL.PRPLPEPVAPQPPPVPSSSLPPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.03|      19|      41|     491|     509|       3
---------------------------------------------------------------------------
  491-  509 (36.53/24.37)	WSPDGLHISSGSSDPAIHI
  535-  553 (33.49/21.73)	WHSSNQLLVSISSDLEIGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.77|      21|      41|     400|     420|       4
---------------------------------------------------------------------------
  400-  420 (39.01/25.82)	RHNNLVL..SCGDDRRFVGFDAR
  442-  464 (31.76/19.81)	RDVNLVMlqTRQLDRQLRLYDVR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03096 with Med31 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DKVKKTATNGTSTPHPPSEMKPLKMPSIILPPSFKRKASAPARPEASETAQHVATTDSDVPKEVRNGSETKRSRTVVPNEVVRETQSQAKPRIRVSSNIPGQAAQQEKSEFHGH
2) MAMKKPKVEQGEEAKTLSTQIPDDKEGLID
3) RPLPEPVAPQPPPVPSSSLPPAPPATAAPSPSPMQYNNMLAKNETRNMVSAGIDRRKRKKGP
97
1
750
210
30
811










Molecular Recognition Features






MoRF SequenceStartStop




1) FYYWKNYRNNR
2) MQYNNMLAKNETRNMVSA
733
783
743
800