<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03095

Description Uncharacterized protein
SequenceMMSNVFDGALSDYSSISVAVKGSIGDTVGGAASRRAVRWAVDNLLPHIDRLVLVHVMPTVTTIPSPSGSKIPVEDLEESVVSMYKQDLRKEFEEVFVPFNKICGSIKVETLLLENDDPAKALLKYISDSEVECLVIGSCSPSFLTRRRYGRKKGQEMPLMVLGEAPETCEVYVIAKDRVLTKSTNQLSPVKLSSDSSYSFRTPKRAEAHTDPFNRTCSDKTGLAASYMSPSPARNQIRRPVSLPPSHQASRVFSPAQASTGIRLGHDEQVRSILGHNIVSTSNMQLNPGANMNTPKWQSNVMYEIAQLRKQVQTTLCMYKQAREELVHKQTQVQSLSYECIKDTKRVISALEKEEMLRKEAEKEKQKHLKAVKEIEEAKSMLAKEFCDRKLAELNALQQALKKQQVMDQLLLSDSRYRKYTKEEIVAATDNFSLSKIIGEGGYGKVYKCSVDHTPVALKVRRPDTIEKKQEFLREISVLSQLRHPHVVLLLGACPDNGCLVYEYMDNGSLDAHISRKKGKPSLPWFIRFKIIYETACGLAFLHNSKPEPIVHRDLKPGNILLDKNFVSKIGDVGLAKLISEEARESVTVYRNSTIAGTLYYLDPEYQRTGTFRPKSDLYAFGIIVLQLLTARHPNGLLFCAEDAVKRGCFGDMLDGSVREWPLAEAEELARIAIQCSQLKCRDRPDLDTQVLPALKRILESAKSKLKTEQAKARPPSHYYCPILKEIMEDPQIAADGFTYEGKAIKAWIQNNQNVSPVTKNRLRHCDLTPNHTLKSAIQEWRSRSGLDLSTTLGSS
Length796
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.391
Instability index50.35
Isoelectric point8.96
Molecular weight89290.66
Publications
PubMed=24916971

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03095
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      87.51|      25|      28|     181|     205|       1
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  181-  205 (42.14/21.32)	TKSTNQLSPVKLSSDSSYSFRTPKR
  210-  234 (45.37/23.41)	TDPFNRTCSDKTGLAASYMSPSPAR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.80|      10|      20|     304|     313|       2
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  304-  313 (16.02/12.20)	EIAQLRKQVQ
  325-  334 (16.77/13.14)	ELVHKQTQVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     244.45|      79|     147|     426|     509|       4
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  426-  509 (132.85/109.83)	VAATDNFSLSKIIGEGGYGKV..YKCS.VDHTPVAL..KVRRPDTIEKKQE.FLREISVLSQL..RHPHVVLLlgaCPDN....GClvYEYMDNGS
  567-  657 (111.60/79.02)	VSKIGDVGLAKLISEEARESVtvYRNStIAGTLYYLdpEYQRTGTFRPKSDlYAFGIIVLQLLtaRHPNGLLF...CAEDavkrGC..FGDMLDGS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.20|      29|      29|     342|     370|       6
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  342-  370 (46.93/37.05)	KDTKRVISALEKEEMLRKEAE.KEKQKHLK
  373-  402 (43.27/33.52)	KEIEEAKSMLAKEFCDRKLAElNALQQALK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03095 with Med32 domain of Kingdom Viridiplantae
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