<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03094

Description Uncharacterized protein
SequenceMNQPQVSLGNSTGGDAEEEEEEVNQHQEEAESRDQIVVEEKSAEGDDQMEVDPVSPATVFCVTLKQPNSNLLHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPSSKAIPPFWIPIHILIPERPTECAVFNVVADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPTQGAANLVHDATSWQCEHEWRQDIAVVTKWLTGASPYRWLSSNSKTSSGTNAKSTFEEKFLSQSSESSARWPNFLCVCSVFSSGSVQLHWSQWPSNQGGTAPKWFSTKKGLLGAGPSGIMAADAIITDSGAMHVAGVPIVNPSTIVVWEVTPGPGNVLQATPKISTGSHVPPSLSSSAWTGFAPLAAYLFNWQEYLISEINKGKKPTDQESSDAISLSCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWKVQRWESSVQPVVLHQIFGSPTSNFGGQVPTQTVWVSRVDLSIPPTNDFKNHQTAVAGPSVDAQKEPDSGDDKANKVVFDPFDLPSDIRTLARIVYSAHGGEIAVAFLRGGVHIFSGPTFSPVENYQINVGSAIAAPAFSPTSCCSASVWHDAAKDCAMLNIIRVLPPALPPNQSKVDQSMWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLTSVIAVMDADFHSLPSTQHRQQYGPNLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALVNPSALVIEPWRTDGETILGTDPEAMAVDPALVSSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAASTGTGSNRNMVASPTQNASSPATIQAVPDKSVNHGPGQPTATTSTTNSSGSTQMQAWMQGAIAKFSSSNDGVSNSTASPVSGSATFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFQRLQASRNHQRNADASSQKLQTGATSKSEEVNSAKPNPALNRMEEAQGFRTSQLGAGVKGIDDNSARTTKMGSGNAGQGYTFEEVRVLFHILMDLCKRTAALPHPLPGSQVGSGNIQVRLHYIDGNYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNLFGGPGTDPEDAVPSDDTFFTQGHSLDVYDRVQSLWPRKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTATWKTGLEGVWYKCIRCLRQTSAFASPGASKQPNPNEREAWWTSRWVYCCPMCGGTWVRVV
Length1242
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.230
Instability index45.39
Isoelectric point5.72
Molecular weight134187.28
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
circadian regulation of gene expression	GO:0032922	IEA:EnsemblPlants
positive regulation of plant-type cell wall cellulose biosynthetic process	GO:2001011	IEA:EnsemblPlants
positive regulation of systemic acquired resistance	GO:1901672	IEA:EnsemblPlants
regulation of cell wall pectin metabolic process	GO:1902066	IEA:EnsemblPlants
regulation of ethylene-activated signaling pathway	GO:0010104	IEA:EnsemblPlants
regulation of jasmonic acid mediated signaling pathway	GO:2000022	IEA:EnsemblPlants
regulation of long-day photoperiodism, flowering	GO:0048586	IEA:EnsemblPlants
regulation of transcription, DNA-templated	GO:0006355	IEA:EnsemblPlants
response to osmotic stress	GO:0006970	IEA:EnsemblPlants
root development	GO:0048364	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03094
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     610.66|     258|     446|     119|     431|       1
---------------------------------------------------------------------------
  119-  304 (162.25/169.21)	.................................................................................................................................................................................................IHILipERPTECAV..FNVVADSPRDSVQFiewSPTSCPRallianfhgritiwtqptqgaanlvhdATSWqceHEWRQDIAV..VTKWLTGASPyrwlSSNSKTSSGTNAKStFEEKFLSQSSESSARWPNFLCVCSVFSSGSVQL.........HWSQWPSNQ..GGTAPKWFSTKKGLLgAGpSGIMAADAIITDSGA
  305-  427 (115.90/84.37)	MHVAGV..PIVNPSTIVV..WEvTPGPgNVLQATPKiSTGshVPPSLSSSAWtgfAPLAAYLfNWQEYLISEINKGKKPTDQESSDAISLSCSPVSNFSAYV..............SPEAAAQSAAT........TTWGSG.VTA.............VAFDP.......................................................................................................................................................................................................................................
  478-  728 (232.00/130.58)	............................................................................................SPTSNFGGQVptqtvwvsrvdlsiPPTNDFKNHQT........AVAGPS.VDAqkepdsgddkankVVFDPfdlpsdirtlarivysahggeiavaflrggVHIF..SGPTFSPVenYQINVGSAIAAPAF...SPTSCCS...........................ASVW...HDAAKDCAMlnIIRVLPPALP....PNQSKVDQSMWERA.IAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLtsviavmdaDFHSLPSTQhrQQYGPNLDRIKCRLL.EG.TNAQEVRAMVLDMQA
  734-  853 (100.51/41.14)	MLGKGIesALVNPSALVIepWR.TDGE.TILGTDPE.AMA..VDPALVSSIQ...AYVDAVL.DLASHFITRLRRYASFCRTLASHAASTGTG..SNRNMVA..............SPTQNASSPATiqavpdksVNHGPGqPTA.........................................................................................................................................................................................................................................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.28|      11|      15|     985|     995|       2
---------------------------------------------------------------------------
  985-  995 (19.59/13.24)	RTSQLGAGVKG
 1002- 1012 (20.69/14.48)	RTTKMGSGNAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     310.93|      95|     174|     882|     984|       3
---------------------------------------------------------------------------
  882-  984 (153.35/105.41)	DGvsNSTASPVSGSATFMPISINTGTFPGTPAVRLIGDCHFLHRLCQlllfCYFQR..LQASRNHQRNADASSQKLQTGATSKS..EEVNSAKPNPalNRMEE...AQGF
 1059- 1160 (157.58/90.43)	DG..NYTVLPEVVEAALGPHMQNMPRPRGADAAGLLLRELELHPPSE....EWHRRnlFGGPGTDPEDAVPSDDTFFTQGHSLDvyDRVQSLWPRK..RRMSErdaAFGL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.71|      19|     765|     441|     463|       5
---------------------------------------------------------------------------
  441-  463 (30.96/31.36)	GQYMSPyDPDEGPSitgWKVQRW
 1209- 1227 (39.76/24.04)	GASKQP.NPNEREA...WWTSRW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03094 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MNQPQVSLGNSTGGDAEEEEEEVNQHQEEAESRDQIVVEEKSAEGDDQME
2) NHQRNADASSQKLQTGATSKSEEVNSAKPNPALNRMEEAQG
3) TGTGSNRNMVASPTQNASSPATIQAVPDKSVNHGPGQPTATTSTTNSSGSTQ
1
943
814
50
983
865










Molecular Recognition Features






MoRF SequenceStartStop




1) EEEEEEVNQHQEE
17
29