<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03091

Description Uncharacterized protein
SequenceMVVVTSDDRLAGALPHVQPMSVASKMCGNHLPEAEKSRVHLPQTNWSKHANASECIPSSNNFLSSTMLYSLESQKPRRSRETASRPIYNIIPVDVQTSAHQHISKAWCALTNLSINNTYLRPGITPAIDDINTNCSFSTRGRSTAKVTSNTDGSFYAHNHQEDSQKRIRGTATSFDCSSSSSPGDGQLTSGKVPWVNNEVRDSITGCINGMEVPPIINLAHPARQVEVIEIDDDDILKGIDVEQIVMEHYYSTCTHQPSVNIFASRGKEQPCLPPELCSICSHGVKLGLCLQASSHVEQMKDALLAVSNELLDDSTDLSPGHFEQLCQERLLLKKQIQLLEILIQDKEKKNSECLASRPSHNIQYETPQTTNHKADYAQADSRAHIKEQGRYVSDNWNMPRDYLCSEDSSRDFPWTKNLELNNKRVFGNHSFRPNQREIINATMSGCDVFVLMPTGGGKSLTYQLPALICAGITLVISPLVSLIQDQIMNLLQANIHAASLSAGMDWTQQLDILRELSSENSKYRLLYVTPEKVAKSDSLLRHLESLNSHSLLARFVIDEAHCVSQWGHDFRPDYQGLGILKKKFPKIPMLALTATATASVKEDVVQALGLVNTVVFRQSFNRPNLWYSVVPKTNKCLEDIDQFIKKNHFDECGIIYCLSKMDCEKVTETLRKFGHKAAFYHGSMDPGKRAFVQKKWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYYQECGRAGRDGQRSSCVLYYCYSDYIRVKHMISQGGPGQSTMTTGYNRIASSGRTLESNTDNLLRMVTYCENEVDCRRFLQLVHLGENFDSTNCKNTCDNCSSSKTLIEKDVTLIGRQLVELVKLTGERFSSAHIVELYRGSLNQTVKKHGHETLHLHGAGKHLSKSQASRILHYLVTKDILTEYVKKSDLYGSVSSLLKVNRSKAASILSGGQTIEMRFPSAVKVVKPSKHGPTPARVALKQTTLPMAPAPPQDSILSDTLFKALKKLRADIVKESSDAVMSYHIFGNPTIQQISKRLPRTKEELLDIHGLGKAKVSKYGDRLLETIESTINNHYGTNKKEGTGSGKRRRDENTNPIVVDDDDDPDWTPSQQSYKKAYAVRGQTCEEATCRF
Length1128
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.447
Instability index46.75
Isoelectric point8.46
Molecular weight125956.67
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03091
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.09|      23|      23|    1027|    1049|       1
---------------------------------------------------------------------------
 1027- 1049 (39.04/26.13)	IQQISKRLPRTKEELLDIH.GLGK
 1052- 1075 (34.04/21.81)	VSKYGDRLLETIESTINNHyGTNK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.55|      14|      24|     513|     527|       2
---------------------------------------------------------------------------
  513-  527 (19.87/18.33)	ILRELSSENSkYRLL
  540-  553 (24.68/17.11)	LLRHLESLNS.HSLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      98.22|      24|      24|     643|     666|       4
---------------------------------------------------------------------------
  618-  640 (16.84/ 6.29)	....RQSFNRPNLWYsVVPKTNkClED
  643-  666 (44.86/29.44)	QFIKKNHFDECGIIY.CLSKMD.C.EK
  669-  689 (36.52/22.55)	ETLRK..FGHKAAFY.HGS.MD.P.GK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      65.05|      19|      26|     252|     270|       5
---------------------------------------------------------------------------
  252-  270 (35.06/26.69)	STCTHQPSVNIF..ASRGKEQ
  279-  299 (29.99/21.55)	SICSHGVKLGLClqASSHVEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.82|      11|      24|     372|     382|       6
---------------------------------------------------------------------------
  372-  382 (20.36/11.58)	NHKADY.AQADS
  398-  409 (18.46/ 9.86)	NMPRDYlCSEDS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.42|      23|     152|     727|     755|       7
---------------------------------------------------------------------------
  723-  747 (36.47/30.76)	VIHHSLPKSIEgyYQECGRAGRDGQ
  752-  774 (42.95/19.06)	VLYYCYSDYIR..VKHMISQGGPGQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.16|      10|      22|     464|     473|      10
---------------------------------------------------------------------------
  464-  473 (18.03/12.14)	QLPALICAGI
  487-  496 (17.13/11.15)	QIMNLLQANI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      78.97|      24|     270|      67|      90|      11
---------------------------------------------------------------------------
   67-   90 (42.96/23.98)	MLYSLESQKPRRSRE.TASRPIYNI
  339-  363 (36.01/19.07)	LLEILIQDKEKKNSEcLASRPSHNI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03091 with Med34 domain of Kingdom Viridiplantae
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