<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03090

Description Uncharacterized protein
SequenceMGDGSSTRSNSSNSSNSEKPEWLQQYNLVGKIGEGTYGLVFLARTKTQPKRPIAIKKFKQSKDGDGVSPTAIREIMLLREISHENVVKLFNVHINFADMSLYLAFDYAEYDLYEIIRHHRDKVGHSLNQYTVKSLLWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEHGIMKIADFGLARIFQAPLKPLSDNGVVVTIWYRAPELLLGSKHYTSAVDMWAVGCIFAELLTLKPLFQGAEAKSSQNPFQVDQLDKIFKILGHPTVDKWPTLANLPHWQSDLQHIQAHKYDSAGLHNVVHLNLKSPAYDLLSKMLEYDPLKRITASQALEHEYFRMDPLPGRNAFVASQPMEKNVNYPTRPVDTNTDFEGTTSINPPQGVAAGNVAGGHGMGSRTMPRPMVAHNMQRMQPQGGVMAYNFPAQAGMNPSVPMQQRGMAQPHQQQQQQLRRKDPGMGMSGYAPPNKNRRL
Length468
PositionKinase
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.477
Instability index41.06
Isoelectric point9.23
Molecular weight52613.53
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein serine/threonine kinase activity	GO:0004674	IEA:UniProtKB-KW

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03090
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     215.20|      72|     129|      76|     157|       1
---------------------------------------------------------------------------
   76-  110 (40.52/15.65)	................................................................................................MLLRE.I.SHE.NVVKLFN.VHINFAD.MSLYLAFDYAEY
  111-  242 (76.17/62.24)	DLYEIirHHRDKVGHSLNQYTVKSllWQLLNGLnylhSNWiiHRDLKpsnilvmgegeehgimkiadfglarifqaplkplsdngvvvtiwyrapeLLLGS.K.HYT.SAVDMWA.VGCIFAElLTLKPLFQGAEA
  247-  317 (98.51/52.68)	NPFQV..DQLDKIFKILGHPTVDK..WPTLANL....PHW..QSDLQ......................................................hIqAHKyDSAGLHNvVHLNLKS.PAYDLLSKMLEY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.07|      32|      37|     360|     396|       2
---------------------------------------------------------------------------
  360-  396 (54.59/45.15)	RP.VDTNTDfegttSINPPQGVAAGNVAGGHGMGS......RTM
  398-  436 (53.48/32.59)	RPmVAHNMQ.....RMQPQGGVMAYNFPAQAGMNPsvpmqqRGM
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03090 with CDK8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AFVASQPMEKNVNYPTRPVDTNTDFEGTTSINPPQGVAAGNVAGGHGMGSRTMPRPMVAHNMQRMQPQGGVMAYNFPAQAGMNPSVPMQQRGMAQPHQQQQQQLRRKDPGMGMSGYAPPNKNRRL
344
468










Molecular Recognition Features






MoRF SequenceStartStop




1) MSGYAPPNKNRRL
2) QLRRKDPG
3) YGLVFLARTKTQPKRPIAIKKFKQ
456
446
37
468
453
60