<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03089

Description Uncharacterized protein
SequenceMDDKKPARASGKHLDLPPPSPSPAVVALAINGKKKSKYVVFWALEKFVPEGLSDFKLLYVRPPITYIPTPMGNAISIKEVRDDVVSAYRQDVDSNTNEMLRPYKKMFERRKVQVEIHVIESQEPAAAIAEEIAATGVTKLVIGVSLLGFFSRKIDMSSMIAAAVPRFCTVYVVSKGKLASVHPSDSDSSGSTRLERIKRSSSTCGSTDSPRARDFASFVSEAHSRVSPFSPAPKYLTFPEMSGSEVVQMDSSSSETEQLEVSGESVMQIVRSGYEGKRNSSGSESFSASFPMGLEAFHAMSWTSKWRDHEERREIMSSCSSNTISNMDWGAVVPDNCSFVSPRTSNMSDGLLSVHSVTDNHVNLSFEIEKLRAELKHVQEMYAMAQTETVDASEELTELNQRRFKESEKLVELKEKEEVAKDTASKDKERYEEVMKEAEKVKELMMKEALHRREAEIKAERNAKEKDKLQASLVSPGIQYQHYSWEEIAAATSDFSEDLKIGVGAYGTVYKCNLHHTTGAVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLVYEYMDNGSLDDRLMLVNDTPPIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDAASKLTVFKKTSPVGTLCYIDPEYQRTGIISPKSDVYSLGVVILQLITAKPAIAITHMVEDAIGDDAEFMGLLDGKAGSWPISETRELAALGLWCSEMRRRDRPDLKDQIIPALERLRKVVDKAQNSITRTPSGPPTHFICPLLKGLMNQPCVAADGYTYDREAIKDWLREKDTSPVTNLPLPNKNLLANYTLYSAIMEWKSNKQ
Length851
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.377
Instability index43.00
Isoelectric point6.15
Molecular weight94996.29
Publications
PubMed=24916971

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03089
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.15|      35|      36|     394|     429|       1
---------------------------------------------------------------------------
  369-  407 (42.20/32.91)	EKLrAELKHVQEMYAMAQTETVDasEELtELN.QRRFKES
  408-  438 (39.60/25.65)	EKL.VELKEKEEVAKDTASKDKEryEEV........MKEA
  439-  466 (37.36/23.77)	EKV.KELMMKEALHRREA...........EIKaERNAKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.52|      16|      17|     315|     330|       2
---------------------------------------------------------------------------
  315-  330 (32.36/22.38)	IMSSCS..SNTISNMDWG
  333-  350 (27.15/17.49)	VPDNCSfvSPRTSNMSDG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      89.27|      18|      49|     238|     255|       4
---------------------------------------------------------------------------
  238-  255 (32.55/21.66)	FPEMSGSEVVQMDSSSSE
  258-  275 (27.70/17.31)	QLEVSGESVMQIVRSGYE
  290-  305 (29.03/18.50)	FP.M.GLEAFHAMSWTSK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03089 with Med32 domain of Kingdom Viridiplantae
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