<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03088

Description Uncharacterized protein
SequenceMEGTSSWKPNEQGGDSLANDWRSQHEPDLRKKVIVAIVERLKICLSRQITDSINKTACTFEEKIYGIAKDKGDYLRKIHEKILAFERRIRTGTSANGANTPDPAQALNQGQSLPTSLTYAQTPTSQQWLSPSSIQSKLNIPESSGLPTQAPMTVSAAQNLNVQMGERVESSLGPGPQRQIQGRQQLLQKPQQQQLRSNTMYQHHGNQQQQSLLPHHRSSSLIKQSFPQSSALSSHQQKMAVPSQEHKQLERKHHISQMMNGKDTQLIHLTSPQNNGEKQRTSQQNNMASFNVHGSSLLGTKGQEVEKSQPLMLQRFQEAGSLHQSQNLADQQKQPYQLQKPTFQDSTSKTLNPSGGDWRDETYQKIKAFREKYIHILSELFQKLSYKLQEIDSLPQQNMMPSEPRVENLRAARAKLGQVLVFLNVSRSSVSEHHRDKFSAYGSLALKFTKHQREKEQQQVHLPPSQINQTSLQSQSGQVHASQTATPNTSQTRPRIEPKDVNKVMSSSGNVVVHSPKQNPPSNQREAVHSNISQDQSSMFQKKQFHHLPRQEQLLERQKQQQPSASSPQMQKNYSSPQLVEQQTLPTPINKTPAQEHPLVTLSSEPISERPIDRLIKAIQSSSPESLAQSVSEMSSVISLTDRLAGSVHTIGGSRARLGGDLSERTRFRVQQGGRHPTKRFKRSLTAMPSQTDSYKRLSVNKIEPSCALVQEIMEINGRFVETVVNICNEDVCPSEVTSGLTVVTCSYVPVALSATFKALYNSGHISQIQPLRLLVPDNYPCSPIIIEKILFDGVSDHKFEDLSARARSRFSLSIKEAMSLKEIAKVWDECARATMLEYAERHGGGTFSSKYGRWESVLRSS
Length862
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.764
Instability index70.02
Isoelectric point9.57
Molecular weight96696.71
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03088
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.86|      23|      24|     307|     330|       2
---------------------------------------------------------------------------
  316-  340 (30.41/15.86)	FQEAGSLHQSQNLADqQKQ......PYQlQK
  543-  572 (28.44/10.85)	KQFHHLPRQEQLLERqKQQqpsassPQM.QK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.51|      17|      23|     179|     195|       3
---------------------------------------------------------------------------
  179-  195 (29.46/15.60)	QIQGRQQ...LLQKPQQQQL
  202-  221 (25.05/12.01)	QHHGNQQqqsLLPHHRSSSL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.89|      12|      16|     584|     595|       5
---------------------------------------------------------------------------
  584-  595 (21.42/12.67)	TLPT.PINKTPAQ
  601-  613 (16.47/ 7.88)	TLSSePISERPID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     180.32|      62|     335|      10|      85|       6
---------------------------------------------------------------------------
   10-   85 (91.36/93.53)	NEQGGdslanDWRS...QHEPDLRKKVIvAIVERL..KICLSRQITDSI.NKTACTFEEKIygiakdkgDYLRKIHEK...ILAF
  352-  422 (88.96/59.34)	NPSGG.....DWRDetyQKIKAFREKYI.HILSELfqKLSYKLQEIDSLpQQNMMPSEPRV........ENLRAARAKlgqVLVF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.94|      31|     213|     425|     512|       7
---------------------------------------------------------------------------
  222-  252 (53.79/ 7.67)	IKQSFPQSSALSSHQQKMAVP..SQEHKQLERK
  467-  499 (49.15/21.61)	INQTSLQSQSGQVHASQTATPntSQTRPRIEPK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.75|      10|      15|     622|     631|       8
---------------------------------------------------------------------------
  622-  631 (17.06/ 8.84)	SSPESLAQSV
  639-  648 (16.69/ 8.49)	SLTDRLAGSV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03088 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HTIGGSRARLGGDLSERTRFRVQQGGRHPTKRFKRSLTA
2) IRTGTSANGANTPDPAQALNQGQSLPTSLTYAQT
3) SPSSIQSKLNIPESSGLPTQAPMTVSAAQNLNVQMGERVESSLGPGPQRQIQGRQQLLQKPQQQQLRSNTMYQHHGNQQQQSLLPHHRSSSLIKQSFPQSSALSSHQQKMAVPSQEHKQLERKHHISQMMNGKDTQLIHLTSPQNNGEKQRTSQQNNMASFNVHGSSLLGTKGQEVEKSQPLMLQRFQEAGSLHQSQNLADQQKQPYQLQKPTFQDSTSKTLNPSGGD
4) YGSLALKFTKHQREKEQQQVHLPPSQINQTSLQSQSGQVHASQTATPNTSQTRPRIEPKDVNKVMSSSGNVVVHSPKQNPPSNQREAVHSNISQDQSSMFQKKQFHHLPRQEQLLERQKQQQPSASSPQMQKNYSSPQLVEQQTLPTPINKTPAQEHPLVTLSSEPI
649
89
130
441
687
122
357
607










Molecular Recognition Features






MoRF SequenceStartStop




NANANA