<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03086

Description Uncharacterized protein
SequenceMQRRPPPLTPYKLKCEKDGLNSRLGPPDFHPPTSTSPEENLTKEYAQSGYKETVDGLKEADEIILTHFHTFSKPVVIKCKEAVRKCFRAINDSRALKRKAGQVYGVPLSGSLLCKPGFPELRSCGEETKKKWIESLSQQHKRLRSLADNIPGYKRKTLFEVLIRNNVPLPRATWFIKVTYLNQVRPSSGSILSGTPDKTQITRCEQWTKDVVDYLQYLLDELLSRNNSYPSQQTRDRSPQMLYTGSIQKISPASASLYGEETSLHFKWWYMVRLLQWHLAEGLLLPNLIVDWVLRLLQEKEVFETLQLLLPIVYGVLESIVLSQTYVQNLVAIAVRFIQEPAPGGSDLVDNSRRAYTLSALTEMIRYLVLAAPDTFVASDCFPLPPSIAACGPNDVSYASKAYENLEKLRSNSAEISTQFQGRGVDSRFEFLSFDYTISTVQRSADDLAKIASAGYPQHNGAKAVQALDKALSDGDIRAAYGYLFKDLCNGAVEETWIAEVSPCLRTSLRWIGDISASFVCSVFFLIEWATCDFRDFRDGEPKDIKFSGRKDCSPVHLVIQLLKQKSLGGEFAARRGKNHRSNFLGGSMDAFESPGPLHDIIVCWIDQHEVHRGGAKRLQLLVFELIRSGIFNPVAYVRQLILSGMIDVIQPAVDLERRMRHHRILKQLPGCFVHDTLEEAQFLGGYKLSEAVRIYSNERRLLLRELLVGKGKHFNTLALSDQKSKKKSTSFPLVDLPRTFDAMGDSEGLRKHTKSSVDIRELKERIAALLQFPRMSCGVKNPVPDEFQSSVKGSTGSVYSKVDQLEATPGCEDCRKAKRPKMDDEKSSWSSPIISNEEDNWWIKKGLKTVEPSLKVDPPIELTKQVPRGRQKMARKTQSLAQLQATRIEGSQGTSTSHVCDSKVSCPHHGHGVEGENHWVVDVFRTSTPVDIVSVGNSLKQLQFVDKRSIAVWLTTVVRQLVEESEKSSVKVGQFNKAAPVEESRTTRWKLGADELSAILFLMDLSLDLVLVVKFLLWLLPKGNSSPNFAIQGGRNLVIMPRDVENNTCEVGEAILVSSLRRYENILLSADLVPETMTALMARAASLMSSNGKISGSAALVYARYILKRYGSVPSVVEWHSNFKATCEKRLLSELDHTRPGNGEYGIPLGVPAGIDNPDEYLRKKITRPSRVGLTMREGVQRKVEEATQYLRKLMGTGTMKASSPAEKNDYGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSAIINSIGISMAKNSDLSVHPSGVGSSNIARYVLQIHITCLCLLKEALGERQSRVFEIALATESSTALSGAFAPGKGSRSSQHQLSPESFDSNANITTNDMPNGSGKIPLSRATKVTAAVSALVIGAITHGVITLERIVGLLRLREYLDFVQFVRRTKSSSNGSARSVGASKMENPVEVYVHWFRLLVGNCKTVSEGLVLELVGESSVVAVSRMQRMLPLKLVFPPAYSILAFVLWRPFVSNGNSNSGVHDDSHRLYQSLTMAFHDVIKHLPFRDVCLRDTQGLYELIVADSTDAEFASVLELNGLDMHLKAVAFAPLRARLFLNSLIDCKVPSCGYSHEGGGVSEAAKNRHQGNGTSLVDKLVSVLDCLQPAKFHWQWVELRLLLNEQALTEKLENHDMPLTDAIRSSCPTSNEKSEASENEKNFIQILLTRLLVRSDAVPLFTEVVHLFGRSVEDSMLKQAEWFLAGQDVLFGRKTIRQKLIIVGESKGLPTKPQFWKPWGWCNNSSSDPITGNKAAAGKKRKLETVTSMEEGEVIEQGLGSKKLLLDEKNRLCFGVTTERAFVKLVLPCIDQSSDESRSTFVNELVKQFSSIEQQVSSVTNRITKHMGTASSGSTEVSSSKGSTRKGLRGGSPSLARRSATTNTTDTVPPPSPAGLRSSMSLRLHFLLRLLPVICREPSFRNTRHTLASTIVRLLGSRVVYEDSSPRNDLSKLETESTTDPSSMADLSNEVLFDRLLFVLHGLLSNHQPNWLKPRSSSNESSKDFTLFDRDAAESLQNELARMQLPDTIRWRIQAAMPTLLPSLRCSLSCQPHSVPATALTLVQPSAGLNQRNSPAIPKTVTAAGQGKLKQTMLSQSQQQQEAENTDVVVDPWTLLEDGTSSGPSSSNPLNNSDMGNVRATCWLKGAVRVRRTDLTYIGSVDEDS
Length2175
PositionKinase
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.270
Instability index45.40
Isoelectric point8.87
Molecular weight241036.70
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03086
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.85|      48|      80|     805|     853|       1
---------------------------------------------------------------------------
  805-  853 (83.19/53.83)	QLEATpGCEDCRKAKRPKMDDEKSSWSSPIISNEEDNWWIKKGLKTVEP
  883-  930 (87.66/52.08)	QLQAT.RIEGSQGTSTSHVCDSKVSCPHHGHGVEGENHWVVDVFRTSTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.67|      37|      80|     620|     658|       2
---------------------------------------------------------------------------
  620-  640 (26.01/15.65)	..........................................................QLLVFELI..RSGIFNPVAYVRQ
  643-  723 (33.83/27.92)	LSGMIDVIQPAVDLERrmrhhrilkqlpgcfvhdtleeaqflggyklseavriysnerRLLLRELLvgKGKHFNTLALSDQ
  724-  784 (33.83/19.64)	KSKKKSTSFPLVDLPR.............tfdamgdseglrkhtkssvdirelkeriaALLQFPRM..SCGVKNPV.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.02|      56|     969|     983|    1101|       3
---------------------------------------------------------------------------
  983- 1043 (87.54/47.16)	EES..RTTRWKLGADELSAILFLMDLSL.....DLVLVVKFLL......WLLPKgnSSPNfaiQGGRNLVIMPR
 1952- 2020 (78.48/43.34)	EDSspRNDLSKLETESTTDPSSMADLSNevlfdRLLFVLHGLLsnhqpnWLKPR..SSSN...ESSKDFTLFDR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.85|      24|      77|    1574|    1597|       4
---------------------------------------------------------------------------
 1574- 1597 (45.06/34.43)	LIDCKVPSCGYSHEGGGVSEAAKN
 1649- 1672 (41.79/31.23)	LTDAIRSSCPTSNEKSEASENEKN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.97|      39|      80|    1367|    1414|       5
---------------------------------------------------------------------------
 1367- 1414 (52.22/61.77)	VSALViGaiTHGVITLERIVGLLRLR.....EY..LDFV...QFVrrtkssSNGSARS
 1446- 1494 (52.74/36.08)	VLELV.G..ESSVVAVSRMQRMLPLKlvfppAYsiLAFVlwrPFV......SNGNSNS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.11|      15|      80|    1257|    1278|       6
---------------------------------------------------------------------------
 1235- 1249 (25.56/ 9.43)	AQEGD....PSLV.SSAVSA
 1259- 1278 (16.55/15.69)	AKNSDlsvhPSGVgSSNIAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     166.11|      53|     864|     400|     467|       7
---------------------------------------------------------------------------
  405-  463 (74.84/72.92)	NLEKLRSNSAEISTQfqgRGVDSRFEFLSfdYTISTVQrSADDLAKIASAGYPQH....NGAK
  561-  617 (91.27/47.10)	QLLKQKSLGGEFAAR...RGKNHRSNFLG..GSMDAFE.SPGPLHDIIVCWIDQHevhrGGAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.22|      23|     864|    1289|    1312|       8
---------------------------------------------------------------------------
 1289- 1311 (37.06/23.81)	CLLKEALG.ERQSRVFEIALATES
 1313- 1336 (34.16/16.47)	TALSGAFApGKGSRSSQHQLSPES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.30|      25|    1040|      87|     119|      14
---------------------------------------------------------------------------
   87-  119 (39.16/40.46)	FRAINDSRALK.....RKAGQVYGVPLsgsllckpGFP
 1124- 1153 (42.14/24.67)	FKATCEKRLLSeldhtRPGNGEYGIPL........GVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.70|      20|     951|     240|     259|      15
---------------------------------------------------------------------------
  240-  259 (35.47/24.92)	QMLYTGSIQKISPASASLYG
 1194- 1213 (36.24/25.65)	KLMGTGTMKASSPAEKNDYG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03086 with Med12 domain of Kingdom Viridiplantae
Unable to open file!