<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03085

Description Uncharacterized protein
SequenceMSLSEVQKPKAPQTNWSEHVKVLDGSPSSVTKHLSSNFLYALESQKPGRCRDVAARSIAFPSVNAHTLAHPQIAKGWRALSSLSINKTYLRPGITPPVDDSYSARERSNVKVTSSTDGSFYSNNRQNQSQMGVPGTGRYSHSFPSSVPGDDKIAAEKFSRVNDEVREPETNCAHSNGVEKPFRNSALAAEQLESGEACLDEIDDDDILQNIDVDQILMEHYQSTSTPQPSVSCFPLRTPPVDRSSSRREEECCLPPELCSNCSHGLKLGLCPEASTHLEQMKNALIAISNELLDDDTDLSPDRIQELRQERLQLKKQIQQLENHIRDKERETSKLLSSTATPSFQYETPKATNRNMDHPQTDSRAQFSEQGRYASESWNMPRDSSFSVDRYGLSSAPVEREQYVPRIIDVTYTEGSSDKKWSSREFSWTKNLEVSNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICQGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWAEQLKIFQELSYEHSKYKLLYVTPEKVAQSDSLLRHLESLNSRGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIRENHFDECGIIYCLSRMDCEKVAEKLKEFGHKAAFYHGSIEPTQRALVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRASCVLYYGYGDYIRVKHMISQGGVDQSPMASGYNRVASSARLLETNSENLHRMLRYCENEVDCRRFLQLVHFGEKFDTTNCKNTCDSCCSSQSLIDKDVTVITRQLVELVKQIGERFSSSHILEVYRGSLNQMVKKHRHETLQFHGAGKQLSKIEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLKVNNSKAASLFSGSQTIMMRFPSSVKVLKPTKPAPTPAKAPVTSADTPPEDLNLSAIMYTALRKLRTLLVKEAPDGVMAYHIFGNATLQQISKKIPRTKEELLEINGLGKAKVTKYGDRLLETIESTVNEYYGTSNKDSMISPDTGKRRRDENTSRNVAEDDDDFAEMSIQSCKKTARNKSNEFGMVVEKLDFDFEDEDGSEIRPEGRVLPW
Length1159
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.531
Instability index49.48
Isoelectric point6.55
Molecular weight130239.58
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03085
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     463.50|     128|     144|     767|     910|       1
---------------------------------------------------------------------------
  670-  760 (92.06/56.14)	...............................................YCLSRMDCEKVAeKLKEF..GHKaaFYHGSIEPT......QRALVQKqwskdEINIIcaT..VAFGM.GINKPDVRF.......VIHHSLPKSIEG...YHQECGRAGRDGQ
  775-  910 (204.45/182.32)	RVKH.MISQG....GVDQSPMasgYNRVASsarLLETNSENLHRMlrYCENEVDCRRFL.QLVHF..GEK..FDTTNCKNTCDSCCSSQSLIDK.....DVTVI..T..RQLVE.LVKQIGERFSSSHILEVYRGSLNQMVKK...HRHETLQFHGAGK
  919- 1057 (167.00/112.42)	RILHyLVTEDilveDVRKSDM...YGSVSS...LLKVNNSKAASL..FSGSQTIMMRFP.SSVKVlkPTK..PAPTPAKAPVTSADTPPEDLNL.....SAIMY..TalRKLRTlLVKEAPDGVMAYHIFG..NATLQQISKKiprTKEELLEINGLGK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     271.26|      65|     218|     105|     180|       2
---------------------------------------------------------------------------
  105-  169 (112.25/66.86)	RER...SNVKVTSST.DGSF.YSNNRQNQSQM...GVPGTGRYSHS.FPSSVPGDDKIAAEKFSRVNDE.VREPE
  189-  257 (73.62/54.79)	AEQlesGEACLDEID.DDDI.LQNIDVDQILMehyQSTSTPQPSVScFPLRTPPVDRSS....SRREEEcCLPPE
  328-  389 (85.39/47.37)	KER...ETSKLLSSTaTPSFqYETPKATNRNM...DHPQTDSRAQ..F..SEQG..RYASESWNMPRDS.SFSVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     165.37|      54|     218|     258|     315|       3
---------------------------------------------------------------------------
  258-  315 (86.48/67.65)	LCsncsHGLKLGLCPEASTHLEQMKNALIA.ISNELLDDDTDLSPD.RI.QELRQERLQLK
  482-  538 (78.89/51.49)	IC....QGITLVISPLVSLIQDQIMNLLQAnIPAASLSAGMEWAEQlKIfQELSYEHSKYK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.78|      31|     138|     434|     468|       4
---------------------------------------------------------------------------
  434-  468 (46.99/35.84)	VSNkkvFGnHSFRPNQRE..IINATMSGSDVFVLMPT
  577-  609 (52.79/28.88)	VSQ...WG.HDFRPDYQSlgILKQKFPNIPVLALTAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03085 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KKQIQQLENHIRDKERETSKLLSSTATPSFQYETPKATNRNMDHPQTDSRAQFSEQGRYA
2) TSSTDGSFYSNNRQNQSQMGVPGTGRYSHSFPSSVPGDDKIAAEKFSRVNDEVREPETNCAHSNGVEK
3) YGTSNKDSMISPDTGKRRRDENTSRNVAEDDDDFA
315
113
1079
374
180
1113










Molecular Recognition Features






MoRF SequenceStartStop




1) EIRPEG
1149
1154