<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03083

Description Uncharacterized protein
SequenceMDNNSWRPDLPNGDPSVDTGDWRSQLPPDSRQKIVNKIMETLKKHLPLSATEGVNELRRIAARFEEKIFSGAVNQSDYLRKISMKMLTMDSKSQNATGSSSSIPAANNVSSMDIKPNIQGHLLPGALPNNQSQAPPQPSLSQPMQSNTASGMTGSTALTNNTNVTSVVNQNPTSLDSTAQTESANGVDWQEEVYQKIQTMKEAYLPDLSEINQRVGAKLQQDASLPQQQRSEQFEKLKQFKNMLDRMIQFLSVPKINIMPALKDKVANYEKQIINFLNNHRPRRPIQQGQMQQQSAQNGQDQSHDSQANTQMQSMSMAGSVPRAQQSSLANMQNNVLSSRPGVSAPQQSIPASSLESGQGNAQVKSISPQSLSSGVSDIRSVVSMVDRIAGSAPGNGSRTSVGEDLVAMTKCRLQARNLMTQEGMPANKKMKRHTTAMPLSVGDNYNQFACSETSDLESTATSVGKKARTETEHALLEEIKEINQRLIDTVVEISNDEDAADASEGATASKGCEGTTVRFSFKAVSLSPALKAHLSSTQMSPIQPLRLLVPCSYPRGSPSLLDNLPVETSKEKEDLSSKAMARFNILLRSLSQPMSLKDIAKTWEACARTVICEYAQQFGGGTFSSKYGTWEKFVAAS
Length638
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.04
Grand average of hydropathy-0.595
Instability index54.35
Isoelectric point8.54
Molecular weight69561.42
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03083
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.29|      16|      19|     342|     358|       1
---------------------------------------------------------------------------
  342-  358 (24.71/15.87)	GvSAPQQSIPASSLESG
  360-  375 (28.58/14.35)	G.NAQVKSISPQSLSSG
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.56|      19|      19|     291|     309|       3
---------------------------------------------------------------------------
  291-  309 (33.96/19.03)	MQQQSAQNGQDQSHDSQ.AN
  312-  331 (28.60/14.79)	MQSMSMAGSVPRAQQSSlAN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.88|      16|      19|     190|     207|       4
---------------------------------------------------------------------------
  190-  207 (23.41/18.15)	QEEVYQKIQtmKEAYLPD
  212-  227 (27.47/14.62)	NQRVGAKLQ..QDASLPQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      93.63|      20|      20|      89|     108|       6
---------------------------------------------------------------------------
   89-  108 (34.83/19.16)	MDSKSQNATGSSSSIPAA..NN
  112-  130 (26.22/12.59)	MDIK.PNIQG..HLLPGAlpNN
  142-  161 (32.58/17.45)	QPMQSNTASGMTGSTALT..NN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.54|      45|      59|     381|     431|      10
---------------------------------------------------------------------------
  381-  431 (70.52/62.81)	SVVSMVDRIAGSAPGN..GSRTSVGEdlvamtKCRLQARNLMTQEGMPANKKM
  441-  487 (69.02/47.95)	SVGDNYNQFACSETSDleSTATSVGK......KARTETEHALLEEIKEINQRL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03083 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LPDLSEINQRVGAKLQQDASLPQQQRSEQFEKLK
2) MDNNSWRPDLPNGDPSVDTGDWRSQLPPDSRQKIVNKIMETL
3) QIINFLNNHRPRRPIQQGQMQQQSAQNGQDQSHDSQANTQMQSMSMAGSVPRAQQSSLANMQNNVLSSRPGVSAPQQSIPASSLESGQGNAQVKSISPQSLSSGVSDI
4) RKISMKMLTMDSKSQNATGSSSSIPAANNVSSMDIKPNIQGHLLPGALPNNQSQAPPQPSLSQPMQSNTASGMTGSTALTNNTNVTSVVNQNPTSLDSTAQTESANGVDWQEE
205
1
272
80
238
42
379
192










Molecular Recognition Features






MoRF SequenceStartStop




NANANA