<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03079

Description Uncharacterized protein
SequenceMGTIGGDELGLDVDETIFVAVAEDVERSKTTLLWAARNFSGKKICLLYVHRPAPPASWTHKKLAGGTFRKHAVKVIERVDKQKVDELMDSYLRLLSKTEVQTDKLCIAGQNIEEGIVDLIARHNIKWFVMGAASDKHYSWRMTDLKSKKAIFVCKNAPDSCHIWFLCKGYLIFTRTANDHSSNTQTMPPLEQLDSDTETRRSEKLESSYMRRRLRYWRSLLEQDGEKETGQLEREKVDPSPTTHSSSGSGSSFGEPASPDLVGSDKLTPSNVQERKREGNVAREVHRYDKAMHDISQSERTVYGEGRNGWKEDDSTMEALCKAKALDGLCSKELSRRKKLEELLEKEKDEVKTVIEQNNGFMRKLQIVQGDNLRLESQITKLQDLEKEHGEKFDTAMELLKSFRQKRDEIRIDHENAIKEVNALKRLIKGKSVESSGSEMLDYSFMEINEATNEFDPSWKLGEGKYGSVYKGNLQNLQVAVKMLPSYGSQNHFEFERKVEILRRVRHPHLVTIMGTCPESRSVIYQYVPNGSLEDCFSSTNNVPALPWESRIRIASEICSALQFLHSNVPCIIHGNLKPSKILLDSSLVTKISDYGISQLIPVNGIDKSDPHVDPHYFVSGEMTLESDVYSFGMILLQLLTRRPLSGVLRDVKCAVENDNISAVLDNSGGDWPIARGKKLANIAIRCCKRNPLNRPDLAIVLRNIDRMKAPLSEQSSYNSSQKPPRKPPSHYLCPIFQEVMKDPLIAADGFTYEAEAIREWLANGHDTSPMTNLKMEDCNLIPNHALHLAIQDWHNQWLMESMEPSTSVEFLQDENRDLKVLLRAALSEKQAAEKQLKETNEQKRSALMQIAGRGLQSIGLGFGFGFKETVQESSETGNLIKDEQEEEEDEDSMVVAIEKTMKNLRKEISQLKLSLQESRLEEARLKKITEEQAQTIEENKMNIDKLKNRERLLSQNVEELVKVIREAESEASRWREACELEVEAGQREVEERNELIAVLKAEVEKMRSALSISEGKLKLKEELAKAAMTAEEAAERSLRLSERRIAELLSRIEHQYRQLEEAESSERRRRKVRYLWCWPLWRFPAAATASAVTGTESSSCGSPLRGSFPGSGQAAGQLHPGELAVVETEDTSEVIDMVVIVVVEASYLVSGRVMDVVIEEVIVIEEVVVDMKEAMISISDIAKNIDL
Length1188
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.528
Instability index53.55
Isoelectric point5.68
Molecular weight134524.41
Publications
PubMed=24916971

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03079
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.53|      22|      34|     689|     719|       1
---------------------------------------------------------------------------
  689-  712 (33.51/41.42)	KRNPLNRPD..LAIVLRNIdrMKAPL
  722-  745 (38.02/19.78)	QKPPRKPPShyLCPIFQEV..MKDPL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      93.76|      16|      34|     959|     974|       2
---------------------------------------------------------------------------
  959-  974 (25.01/14.91)	EELVKVIREAESEASR
  994- 1008 (21.56/11.80)	NELIAVLK.AEVEKMR
 1022- 1037 (22.80/12.92)	EELAKAAMTAEEAAER
 1054- 1069 (24.39/14.35)	EHQYRQLEEAESSERR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     234.89|      83|     157|     136|     238|       3
---------------------------------------------------------------------------
  136-  238 (121.54/129.96)	KHYSWRMTDL.KSKKAIFV................CK.NAPDSchiwfLCKGYLiftrtandhSSNTQTMPPLEQlDSDtETRRSEKLESSYMRR.......RLRYWRSLLE.QDGEKETGqlerEKVD
  286-  394 (113.35/74.15)	HRYDKAMHDIsQSERTVYGegrngwkeddstmealCKaKALDG.....LCSKEL.........SRRKKLEELLEK.EKD.EVKTVIEQNNGFMRKlqivqgdNLRLESQITKlQDLEKEHG....EKFD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.73|      20|      34|     760|     780|       4
---------------------------------------------------------------------------
  760-  780 (33.91/23.95)	EWLANGHDTSPMTNLkMEDCN
  797-  816 (35.82/20.80)	QWLMESMEPSTSVEF.LQDEN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.58|      25|      27|    1116|    1141|      11
---------------------------------------------------------------------------
 1116- 1141 (37.20/29.19)	AGQLHPGELAVVETEDTSeVIDMVVI
 1146- 1170 (39.38/25.95)	ASYLVSGRVMDVVIEEVI.VIEEVVV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03079 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KETGQLEREKVDPSPTTHSSSGSGSSFGEPASPDLVGSDKLTPSNVQERKREGNVAREVHRYDKAMHDISQSERTVYGEGRNGWK
227
311










Molecular Recognition Features






MoRF SequenceStartStop




NANANA