<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03075

Description Uncharacterized protein
SequenceMDNNNWRPSLPSGDPAMETGDWRAQLPPDSRQKIVNKIMETLKKHLPYSGPEGINELRRIAARFEEKIFSGAVNQTDYLRKISMKMLTMETKSQNAAGSSSTIPTANNGTSMDSMPTNQGNLLPGTLPNNQSQAPQPLLPQTMQNNTASVMMGSSALPSSMPPVSSMTHNNVASVVNQNSNMQNVAGMLQDSSGQHGLSSNMFPGSQRQMLGRPHAMSSQQQPQSQSAQYLYQQQLQQQLLKQNFGSGNVPNPSSLLPSHIQQQQQQQNVMQPNQMHSSQQSGIPTSATQASSVSSAPLQGLHTNQQSSPQLPGQQTTTQAMLRQHQSSLLRQHPQSQQASGIHQQQTSLPQQSISPLQQQQSQMIRQQAANSSGIQQKQMMGQHLVGDMQQQQHQQRLLNQQNNMMNMQQQQQPLQQKQQPPAQQLMSQQNSLQATHQQPLATQSNVSGLQQSNVTGLQQPQQQLLNSQVGNSNLQTNQQSVHMLSQPTGMQRTHQAGHGLFPSQGQQSQNQPSQQQMMPLQSHHQLGLQQQPNLLQQDVQQRLQSSGQVTGSLLPPQNVVDHQRQLYQSQRALPEMPSSSLDSTAQTENANGVDWQEEAFQKIKTMKEAYLPDLNEIYQRVTAKLQQDSLPQQQRSEQFEKLKQFKTMLERMIQFLSVSKTNIVPALKDKVTFYEKQIITFLNMHRPRKPVQQGQLPQSQMQPMQQQQSQNVQDQSHDSQANPQMQSMSMPGSSGQRAQQSSLTNMQNSLLSSRPGVSAPQQNIPSSMPASSLESGQGNALNNAQQIAMGSMQQNTSQQQQVNNSSASAQSGLSTLQSNVNQTQLSSSLLQQQHMKQQQDQQMTQQFKQQFQQRQMQQQLKQQIIQQQQQQQQLQARQQVAQNDMNDSTARQGMNAGRGMFQQHSLQGQRANYPLQQLKPGSQLPVTSPQLMQGQSPQMIQQHMSPQIDQKIAMSSVNKTGTPLQPANSPFIVPSPSTPLAPSPMQVDSEKPSGASSLSMGNTARQQATGMQGVVQSLAIGTPGISASPLLQEFITPDGNNLNPLIITSGKPSGTELPMERLIRVVKSISPQALSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDLVAMTKCRLQARNFMTQEGMMATKKMKRHTTAMPLSVSSLEGSVGDNYKQFACSGTSDLESTATSDGKKARTETDHALLEEIKEINQRLIDTVVEISDDEDAADPSEGATARKGCEGTTVKFSFIAVSLSPALKAHLSSTQMSPIQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAMARFNILLRSLSQPMSLKDIAKTWDACARTVICEYAQQFGGGTFSSKYGTWEKYLAAS
Length1349
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.03
Grand average of hydropathy-0.769
Instability index71.54
Isoelectric point9.31
Molecular weight148162.31
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03075
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            11|     595.58|      57|      57|     718|     774|       1
---------------------------------------------------------------------------
  113-  166 (42.96/ 6.20)	..DSM..PTNQGNL..LPGTlpNNQsQ...A........PQPLL.pQTM...QN..NTASV..MM......G..S.....SA....L.P.....S....SMP........PvSS
  218-  256 (44.07/ 6.59)	..SSQQQPQSQ...........SAQ.Y...L........YQQQL........QQ..QLLKQ..NF......G........SGNVPN..P.....S....SL.............
  303-  369 (45.11/ 6.95)	HTNQQSSPQ.......LPGQ....Q.T...T........TQAML..RQH...QS..SLLRQ..HPqsqqasG..IhqqqtSLPQQSIsPlqqqqS....QMI........R.QQ
  370-  426 (58.64/11.66)	AANSSGIQQKQMMGqhLVGD..MQQ.Q...Q........HQQRL..LNQ...QN..NMMNM..QQ......Q..Q.....QPLQQK........Q....QPP........A.QQ
  431-  492 (52.56/ 9.54)	QNSLQATHQQPLAT..QSNV..SG......L........QQSNV..TGLqqpQQ..QLLNS..QV......G..N.....SNLQTNQ.Q.....SvhmlSQP........T.GM
  507-  567 (53.81/ 9.98)	GQQSQNQPSQQQM...MPLQ..SHH.QlglQ........QQPNLlqQDV...QQ..RLQSSgqVT......G..S.....LLPPQNV.V.....D....HQ...........RQ
  718-  774 (103.98/27.44)	SHDSQANPQMQSMS..MPGS..SGQ.R...A........QQSSL..TNM...QN..SLLSS..RP......G..V.....SAPQQNI.P.....S....SMP........A.SS
  779-  830 (57.07/11.11)	QGNALNNA..QQIA..M.GS..MQQ.N...T........SQQQQ..VN.....N..SSASA..QS......G..L.....STLQSNV.N.....Q....TQL........S.SS
  835-  870 (46.95/ 7.59)	QHMKQQQDQ....Q..M.....TQQ.F...K........QQFQQ..RQM...QQ..QL........................KQQII.Q.......................QQ
  873-  930 (45.84/ 7.20)	QQQLQARQQVAQND..MNDS..TAR.Q...GmnagrgmfQQHSL..QGQ...RAnyPLQQL..KP......G......................S....QLP........V.TS
  933-  999 (44.60/ 6.77)	LMQGQ.SPQMIQQH..MSPQ..IDQ.K...I........AMSSV..NKT...GT..PLQPA..NS......PfiV.....PSPSTPLaP.....S....PMQvdsekpsgA.SS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.95|      22|      72|    1198|    1221|       2
---------------------------------------------------------------------------
 1198- 1221 (33.06/32.18)	LIDTV.VEISDDEDaaDPSEGATAR
 1272- 1294 (31.89/23.27)	LLDKLpVETSKENE..DLSSKAMAR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.49|      46|     570|       8|      66|       3
---------------------------------------------------------------------------
    8-   66 (59.82/69.38)	PSLPSG..DPAMETG.....DWRaqlpPDSRQKIvnKIMEtlKKHLPysgpEgINEL.RRIAARFEE
  576-  629 (67.67/39.39)	PEMPSSslDSTAQTEnangvDWQ....EEAFQKI..KTMK..EAYLP....D.LNEIyQRVTAKLQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.70|      17|      71|     190|     214|       5
---------------------------------------------------------------------------
  198-  214 (30.64/19.33)	LSSNMFPGSQRQMLGRP
  257-  273 (33.06/ 6.25)	LPSHIQQQQQQQNVMQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.06|      19|     408|     275|     300|       6
---------------------------------------------------------------------------
  275-  300 (29.18/20.85)	QMHSS....QQSGIPTSATQassvssaPLQ
  685-  707 (33.88/12.49)	NMHRPrkpvQQGQLPQSQMQ.......PMQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03075 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LKQNFGSGNVPNPSSLLPSHIQQQQQQQNVMQPNQMHSSQQSGIPTSATQASSVSSAPLQGLHTNQQSSPQLPGQQTTTQAMLRQHQSSLLRQHPQSQQASGIHQQQTSLPQQSISPLQQQQSQMIRQQAANSSGIQQKQMMGQHLVGDMQQQQHQQRLLNQQNNMMNMQQQQQPLQQKQQPPAQQLMSQQNSLQATHQQPLATQSNVSGLQQSNVTGLQQPQQQLLNSQVGNSNLQTNQQSVHMLSQPTGMQRTHQAGHGLFPSQGQQSQNQPSQQQMMPLQSHHQLGLQQQPNLLQQDVQQR
2) MDNNNWRPSLPSGDPAMETGDWRAQLPPDSRQKIVNKIMETL
3) MHRPRKPVQQGQLPQSQMQPMQQQQSQNVQDQSHDSQANPQMQSMSMPGSSGQRAQQSSLTNMQNSLLSSRPGVSAPQQNIPSSMPASSLESGQGNALNNAQQIAMGSMQQNTSQQQQVNNSSASAQSGLSTLQSNVNQTQLSSSLLQQQHMKQQQDQQMTQQFKQQFQQ
4) QQQLQARQQVAQNDMNDSTARQGMNAGRGMFQQHSLQGQRANYPLQQLKPGSQLPVTSPQLMQGQSPQMIQQHMSPQIDQKIAMSSVNKTGTPLQPANSPFIVPSPSTPLAPSPMQVDSEKPSGASSLSMGNTARQQATGMQGVVQ
5) QSSGQVTGSLLPPQNVVDHQRQLYQSQRALPEMPSSSLDSTAQTENANGVDWQEE
6) RKISMKMLTMETKSQNAAGSSSTIPTANNGTSMDSMPTNQGNLLPGTLPNNQSQAPQPLLPQTMQNNTASVMMGSSALPSSMPPVSSMTHNNVASVVNQNSNMQNVAGMLQDSSGQHGLSSNMFPGSQRQMLGRPHAMSSQQQPQSQSAQYLYQ
241
1
686
873
546
80
544
42
855
1018
600
233










Molecular Recognition Features






MoRF SequenceStartStop




NANANA