<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03073

Description Uncharacterized protein
SequenceMINSNQVSRSHLPEVQKPKVPQTNWSEHAKAFEDPSSRTKHLSSGFLYALESQKPRKSRDMAARSIAFPSVNAHTLAHPQIAKAWSALSSLSLNKTYLRPGITPPVDDGGTNGSYSARERSTVKVTCSTDGSFYSNNQQNQSQMGVPGTGRNFHSFPPPVPGDGKIFAEKFPRINDEAREPETCSAHLNGVEKPFRSSAFAAEQLGSGEACLDEIDDDILQNIDVDQIMMEHYQSTSTPPPSVSSLPSRTPPVDRSASRREEECCLPPELCSNCSHGIKLGLCPEASTHLEQMKNMLIAISNELLDDDTDLSPDRIQELRQERLLLKKQIQQLEDHTRDKEKHKSQFLSSTATRASQCETPKSTNLRFDHPQTDSQTHFNEQGRYASDSWNMPKDSSLSVDRYGLSSAPVEREQYVPRIIEVTYTEGSNDQKWSSRDFPWTRKLEVSNKKVFGNHSFRPNQREIINATMSGSDVFVLMPTGGGKSLTYQLPALICQGITLVISPLVSLIQDQIMNLLQANIPAASLSAGMEWSEQLKIFQELSSEHSKYKLLYVTPEKVAQSDSLLRHLDNLNSCGLLARFVIDEAHCVSQWGHDFRPDYQSLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQSFNRPNLLYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRNDCEKVAQKLQEFGHKAAFYHGSIEPTQRALVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRASCVLYYGYGDYIRVKHMISQVGVDQNPMAIGYNRVASSGRLLETNTENLLRMVRYCENEVDCRRFLQLVHFGEKFDSTNCKRTCDNCSSSQSLIDKDVTLITRQLVELVKQTGERFSSSHILEVYRGSLNQMVKKHRHETLQFHGAGKHLTKLEVSRILHYLVTEDILVEDVRKSDMYGSVSSLLKVNKSKAASLFSGSQTIMMRFPSSVKVLKPCKAAPTPAKAPLVSADAPPEDVNLSAIMYTALRKLRTLLVKEAPDGVMAYHIFGNATLQQMSKKIPRTKEELLEINGLGKAKVLKYGERLLETIESTVNEYYGTSKKEESMISPDSGKRRRDENISPNVTEEDDDFAESSSQSCKKTVRSKSSEVLHGECVDGGGVGMVMEKLDFDFDFEDEDGSEIRPEGRVLPW
Length1185
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.514
Instability index50.93
Isoelectric point6.61
Molecular weight132703.63
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03073
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     481.87|     136|     144|     779|     922|       1
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  682-  769 (86.79/49.06)	.......................................................YCLSRNDCEKVAQkLQEFGH..KaaFYHGSIEPT......QRALVQKqwskdEVNIIcaT..VAFGM.GINKPDVRF.......VIHHSLPKSIEG...YHQECGR...AGR
  779-  922 (218.43/160.87)	YYGYGDYIRVKH..MISQV...GVDQNPMaigYNRVASsgrLLETNTENLLRMvrYCENEVDCRRFLQ.LVHFGE..K..FDSTNCKRTCDNCSSSQSLIDK.....DVTLI..T..RQLVE.LVKQTGERFSSSHILEVYRGSLNQMVKK...HRHETLQFHGAGK
  923- 1069 (176.66/112.32)	HLTKLEVSRILHylVTEDIlveDVRKSDM...YGSVSS...LLKVNKSKAASL..FSGSQTIMMRFPS.SVKVLKpcK..AAPTPAKAPLVSADAPPEDVNL.....SAIMY..TalRKLRTlLVKEAPDGVMAYHIFG..NATLQQMSKKiprTKEELLEINGLGK
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     127.34|      42|      85|     179|     226|       2
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  179-  226 (61.25/60.55)	RE......PETCSAHLNGVE...KPFRSSAFaaEQLgsgEACLDEIDDDILQNiDVD
  260-  310 (66.09/44.44)	REeecclpPELCSNCSHGIKlglCPEASTHL..EQM...KNMLIAISNELLDD.DTD
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     269.79|      74|     140|     446|     522|       3
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  446-  522 (121.15/94.93)	VSNK.KVFGNHSFRPNQRE..IINAT...MSGSDVFVLMPTGggkSLTYQLPALICQGI..TLVISPLVSLIQD.QIMNLLQANIP
  532-  585 (49.52/30.37)	WSEQlKIFQELSSEHSKYK..LLYVTpekVAQSD...........SLLRHLDNLNSCGLlaRFVIDE...................
  589-  657 (99.11/69.01)	VSQ....WG.HDFRPDYQSlgILKQK...FPNIPVLALTATA.....TASVKEDVVQAL..GLV..NCVVFRQSfNRPNLLYSVVP
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     258.20|      89|     299|      32|     151|       7
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   32-  151 (127.13/123.75)	FEDPS.SRTKHlSSGFlyaLESQKPRKSRDMAARS..IAF..PSVNAHTLAHPQ...............IAKAWSALSSLSLNktylrpgitppvddggtngsysaRERSTVKV..TCSTDGSfysnNQQNQSQMGVPGTGR
  333-  443 (131.07/81.53)	LEDHTrDKEKH.KSQF...LSSTATRASQCETPKStnLRFdhPQTDSQTHFNEQgryasdswnmpkdssLSVDRYGLSSAPVE.......................REQYVPRIieVTYTEGS....NDQKWSSRDFPWTRK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03073 with Med34 domain of Kingdom Viridiplantae
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