<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03067

Description Uncharacterized protein
SequenceMEYLALLPPSPSPSSFRTVFVALSGSRKSKYVVTWALEKFGPEGNVGFKLLHIHPRITCVPTPMGNTIPISEVREDVVTAYRQEILCQSEQVLTPFKKMFEKRRVAVEVLVIESNNVAAAIAEEVIRNSTERLVIGSSSRRFFSRRVDLCSAISALMPNFCTVFVVSKGKLSSVRPGYLDANASIRDDTSSSSSRPISESTDGTSSARDSSSSSISLPVRRLQHLTTAARQASAQMETNSVGSEVTMCMSMDVSRTNKSSMDTKSPSTPGLRDNEERKKAMSSSSSNLEYGNATHSRSSQQASSMCDNISEQSYTSNQVNLSFEVDKLKAELRHIQEMYAVAQTEIFDASRKLGEINQRRLEEARKLEEIKLKEYEAKELAEKEKQNFEKAKRDVESMREKVEKEIAQRREAERKAIRDSKEKEKLEGTLGTPQMQYQHFTWEEIVAATSSFSEEMKIGMGTCGAVYKCNMHHTTAAVKVLHSPESRLSKEFQQELEILSKIRHPHLVLLLGACPEQGALVYEYMENGNLEDRLFQVNNTPPLPWFERIRIAWEVAAALVFLHKSKPKPIIHRDLKPANILLDHNFVSKVGDVGLSTMVQVDHLSTKYTIYKQTSPVGTISYMDPEYQRTGMISSKADVYSFGIILLQLLTAKPPMALTHFVESAMDSDDGFLKILDRKAGNWPVEETRELTALALCCTELRGKDRPDLRDQVLPALESMKRVGEKARHSISGVPTQPPTHFLCPLLKDVMNEPCVAADGYTYDRHAIEKWLEEHDTSPMTDSPLNNKDLLPNYTLFTAIMEWRSRLK
Length808
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.446
Instability index51.52
Isoelectric point7.06
Molecular weight90897.61
Publications
PubMed=24916971

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
	 href='https://www.uniprot.org/unirule/RU364143' style='color:#FF0000;'>RuleBase:RU364143
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03067
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     340.61|     112|     136|     458|     578|       1
---------------------------------------------------------------------------
  458-  578 (178.54/161.84)	IGMGTCGAVYKCNMHHT....TAAVKVLhspeSRLSKEFQQELEILSK..IRHPHLVLL..LGACPEQgALVYeYMENG.NLEDRLFQVNNTPPLPW.FERIRiawEVAA.ALVFLH.KSKPKPIIHRDLKPA
  593-  716 (162.07/118.63)	VGLSTMVQVDHLSTKYTiykqTSPVGTI....SYMDPEYQRTGMISSKadVYSFGIILLqlLTAKPPM.ALTH.FVESAmDSDDGFLKILDRKAGNWpVEETR...ELTAlALCCTElRGKDRPDLRDQVLPA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.42|      30|     136|     260|     291|       2
---------------------------------------------------------------------------
  188-  220 (42.41/21.36)	DTSSSSSRPIsesTDGTSSARDSSSSSISLPVR
  262-  291 (51.01/34.77)	DTKSPSTPGL...RDNEERKKAMSSSSSNLEYG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.08|      23|      23|     372|     394|       3
---------------------------------------------------------------------------
  347-  367 (18.16/10.14)	...FDAsRKLGEINQRRLEEARKL
  372-  394 (35.89/28.30)	LKEYEA.KELAEKEKQNFEKAKRD
  398-  419 (32.04/24.35)	MREKVE.KEIAQR.REAERKAIRD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03067 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) EKEKQNFEKAKRDVESMREKVEKEIAQRREAERKAIRDSKEKEKLEGTL
2) NASIRDDTSSSSSRPISESTDGTSSARDSSSSSISLPVRRLQHLTTAARQASAQMETNSVGSEVTMCMSMDVSRTNKSSMDTKSPSTPGLRDNEERKKAMSSSSSNLEYGNATHSRSSQQASSMCDNISE
382
182
430
311










Molecular Recognition Features






MoRF SequenceStartStop




NANANA