<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03066

Description Uncharacterized protein
SequenceMREGALIVAVAIKGNNSKTKGVIRWALQEFASQEHVVFKLLHVQPRDSMSVSTSRKGSTTTVYKKDVDRKTREMLHPSSSMFAHREVQLDMMVLESDDVADAISKAVQDHGISELVIGASSSSIIFSWKLKRSNLSSRIADVTPRFCTVHVISKGKLVNVRKSDVDIETSIADDRSESQFSSSSQSGSVSSTSSHQFSSTSLLYQRVQALSTVNQKVGTNMGTTKSIDTHHSRAASLDVDEPNQRGYYRTNSSLIRYKESDIHSRRSSLTEEGSSSGCYSDPTSCSSQMNKDFELEKLKIELRHIKGMYAVAQSEVLDATKKMQDLNQRRSEEATRLKNLTIREEYAEEAVEMERERQEEAENEAELVRESVERETEERLEAEARAEEVRKEKQRLEDALEGGPLQRQQYMKFEWEDIVQATSSFSDELKIGTGGYGSVYRCNLHHATVAVKVLHSDKSSLTKQFHQELEILSKIRHPHLLLLLGACPERGSLVYEYMHNGNLEERLMKRRPNTDAPQQPLLWFERFRIAWEIASALYFLHTNEPRPIVHRDLKPANILLDQNNVSKIGDVGLSKMVNLDPSHASTVFNETGPVGTFFYIDPEYQRTGVVTPESDIYAFGIILLQLATARSAMGLAHSVEKALRDQTGNFSEILDETAGDWPVKEAKEMVMIGLRCAEMRKRDRPYLGKEILPVLERLKDVASDARNMFSETGSKHHNHAPSHFYCPITKDVMENPCVASDGYTYEKRAIKEWLEKNHKSPMTDSPFPNQTLLPNHSLLFAIKEWRSLHRKKVQSYKANSLVD
Length803
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.589
Instability index45.63
Isoelectric point6.52
Molecular weight90989.57
Publications
PubMed=24916971

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03066
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.18|      39|      95|      43|      82|       1
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   43-   82 (63.34/46.97)	VQPRdSMSVSTSRKGSTTTVYKKDVDRKTREMLHPSSSMF
  142-  180 (62.84/41.55)	VTPR.FCTVHVISKGKLVNVRKSDVDIETSIADDRSESQF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.39|      31|     139|     546|     583|       2
---------------------------------------------------------------------------
  547-  583 (37.86/47.31)	PIVHRdLKpaNILLDQNNVskIGDVGlSKMVNLDPSH
  693-  723 (57.53/34.76)	PVLER.LK..DVASDARNM..FSETG.SKHHNHAPSH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      97.00|      26|      28|     348|     373|       3
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  322-  343 (23.93/14.24)	....KMQDLNQRRSEEATRLKNLTIR
  348-  373 (38.88/28.28)	EEAVEMERERQEEAENEAELVRESVE
  377-  401 (34.19/23.88)	EERLEAE.ARAEEVRKEKQRLEDALE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.26|      22|      30|     231|     253|       4
---------------------------------------------------------------------------
  231-  253 (37.01/28.05)	HSRAASLdVDEPNQRGYY..RTNSS
  263-  286 (36.26/22.21)	HSRRSSL.TEEGSSSGCYsdPTSCS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     252.07|      80|     186|     403|     489|       5
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  403-  489 (126.45/111.22)	GPLQRQQYMKFEWedivQATSSFSDELKIgtGGYGsVYRCNLHHATVAVKVLHSDKSSLTKQFHQELEILSK......IRHPHLLLLLG.ACPE
  592-  678 (125.61/89.56)	GPVGTFFYIDPEY....QRTGVVTPESDI..YAFG.IILLQLATARSAMGLAHSVEKALRDQTGNFSEILDEtagdwpVKEAKEMVMIGlRCAE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03066 with Med32 domain of Kingdom Viridiplantae
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