<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03063

Description Uncharacterized protein
SequenceMEGNSNWKPNQPGGDSLASNNANDWRSQLPPDMRKKVILAIVEKVKIYCPTRHPNDIKNTAFSFEGKIYAAATDKDDYMRTIKGNIMNFDRKFRMQSGSSVNGTNTPAPAAQALNQVQSVPTSLPYTQTPTSQQWLPQNNNNIQRNLNIFESSGLPNQVSSAAQNLNIQMGEGVHSNLLPGSQRQVHGREQHLPQQPQSSNYFQNQMDQQLLKEEVQPSYMQQQHHQPTLLKQPIQQSVPQPSALSSLPPSGQQNSQFLSRQNQFPTQRVHSSHHQQQMHVPSQEQKRQEREQLTSHLMNGQDTQQNHLTSQQNNGEQQRAFRVSSSQQNNIASFQERPQQNNNIQNLHQQQRLYSHSNNASALPSQQQQYNVHVSSSLGAQGQEVGQSQQMIHQKYQPQHTMHQTQNRISQQPLDDTQRFQASGSLLQTQQNQPYQLQRTSPANTSTSQDSTGQTVNESGGGDWQEETYQKIKALKEKYILVVSALFQKLSNKLREIDAHPQQKIQHGHMEKLRATKATLKLVLVFLNVPRNAITESHREKFSIYEEQLLRFVKHNQTVTRRPMQQQQQVHLPPPQTHQTPLQSQSGHQVFHVPQSSTVSNLTTSHTAMPHSSQTRPTMEPKEETNIMTLPASNPQPSMFQQKQFHHLPMQQRQQQQPQTNHQQLHMPKIEMNDVRMSQRVNHKAGLRQRHLAKPLSSPQLVDQQILPPTFNKNGTSSQSGGSPFVAPSFAPSPNLGDPENPISVESPSSHDYQLQPAAQEQPQEPHAERPIDRLIKAFQSSSPESLAQSISEMSSVISLTDRLAGSVQSIGGSRARVPQDLSERTRLRLQRGETNPTNKRFKRSITTQSIDITSETESYKQFSSLESEVDSTASSGSKANKIEPGLALLQEIMEVNGRLVETMVSICSEDVGPSEVTTGTIVMCSYAPVALCDTFQALYKSGHVSQIQPLRLLVPDNYPHSPILIENIPFDSSVNKHEDLSARTRSRFGLSMKEFSEPMSLTAIAQAWDACARATMAEYAERHGEGTFSSKYGHWEPVLRAS
Length1044
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.894
Instability index69.25
Isoelectric point8.99
Molecular weight117484.25
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03063
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     687.01|      84|      84|     253|     336|       1
---------------------------------------------------------------------------
  183-  249 (85.10/25.85)	QR..QV................HGREQHLPQ.........QPQSSNYFQ...NQM.......DQQLL.KEEVQPSY...........MQ.QQHHQP....TLLKQpiQQ....................SVPQPSA...LS.SLP
  253-  336 (146.21/49.44)	QQNSQF................LSRQNQFPT.........QRVHSSHHQ...QQMHV..PSQEQKRQEREQLTSHL...........MNGQDTQQN....HLTSQ..QN.NGE....QQ.....RAFRVSSSQQNN...IA.SFQ
  340-  422 (98.74/31.11)	QQNNNI...................QNLHQQ.........QRLY.SHSN...NASAL..PSQQQ..QYNVHVSSSL..........gAQGQEVGQSqqmiHQKYQ..PQ.HTM....HQ.....TQNRISQQPLDD...TQ.RFQ
  431-  489 (71.59/20.63)	QQNQPY..........................................Q...LQRTS..PANTSTSQDSTGQTVNE...........SGGGDWQEE......TYQ..KI.KAL....KE.....KYILVVSA..........LFQ
  503-  570 (37.60/ 7.51)	QQKIQHghmeklratkatlklvLVFLN.VPR.........NAITES.HR...EKFSI..Y........EEQLLRFV...........KHNQTVTRR....PMQQQ..QQ....................................
  572-  656 (76.89/22.68)	.....H................LPPPQTHQT..........PLQSQSGH...QVFHV..P...QSSTVSNLTTSHTamphssqtrptMEPKE.ETN....IMTLP..AS.NPQpsmfQQ.....KQFHHLPMQQRQ........Q
  660-  731 (50.20/12.38)	QTNHQ....................QLHMPKiemndvrmsQRVNHKAGL...RQRHLakP...........LSS...............PQLVDQQ....ILPPT..FNkNG.................TSSQSGGspfVApSF.
  732-  789 (65.12/18.14)	APSPNL................GDPEN..PI.........SVESPSSHD...YQLQP..AAQEQ............................PQEP....H..........AE....RPidrliKAFQ.SSSPE........SLA
  790-  856 (55.56/14.45)	.QSISE................MSSVISL.T.........DRLAGSVQSiggSRARV..P...QDLSERTRL..RL...........QRG.................ET.NPT....NK.....RFKRSITTQSID...IT.S..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.94|      14|      18|     136|     149|       2
---------------------------------------------------------------------------
  136-  149 (25.82/12.37)	LPQNNNNIQRNLNI
  155-  168 (24.13/11.09)	LPNQVSSAAQNLNI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.42|      19|      20|      47|      66|       3
---------------------------------------------------------------------------
   47-   65 (36.71/26.20)	IYCPTRHPND....IKNTAFSFE
   68-   90 (27.71/12.89)	IYAAATDKDDymrtIKGNIMNFD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.68|      14|      21|      94|     107|       5
---------------------------------------------------------------------------
   94-  107 (26.17/12.64)	RMQS.GSSVNGTNTP
  116-  130 (22.51/ 9.85)	QVQSvPTSLPYTQTP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03063 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FRMQSGSSVNGTNTPAPAAQALNQVQSVPTSLPYTQTPTSQQWLPQNNNNIQRNLNIFESSGLP
2) HNQTVTRRPMQQQQQVHLPPPQTHQTPLQSQSGHQVFHVPQSSTVSNLTTSHTAMPHSSQTRPTMEPKEETNIMTLPASNPQPSMFQQKQFHHLPMQQRQQQQPQTNHQQLHMPKIEMNDVRMSQRVNHKAGLRQRHLAKPLSSPQLVDQQILPPTFNKNGTSSQSGGSPFVAPSFAPSPNLGDPENPISVESPSSHDYQLQPAAQEQPQEPHAERPIDRLIKAFQSSSPESLA
3) MEGNSNWKPNQPGGDSLASNNANDWRSQLP
4) QVSSAAQNLNIQMGEGVHSNLLPGSQRQVHGREQHLPQQPQSSNYFQNQMDQQLLKEEVQPSYMQQQHHQPTLLKQPIQQSVPQPSALSSLPPSGQQNSQFLSRQNQFPTQRVHSSHHQQQMHVPSQEQKRQEREQLTSHLMNGQDTQQNHLTSQQNNGEQQRAFRVSSSQQNNIASFQERPQQNNNIQNLHQQQRLYSHSNNASALPSQQQQYNVHVSSSLGAQGQEVGQSQQMIHQKYQPQHTMHQTQNRISQQPLDDTQRFQASGSLLQTQQNQPYQLQRTSPANTSTSQDSTGQTVNESGGGDWQEE
5) VQSIGGSRARVPQDLSERTRLRLQRGETNPTNKRFKRSITT
93
556
1
158
809
156
789
30
468
849










Molecular Recognition Features






MoRF SequenceStartStop




1) PIDRLIK
772
778