<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03060

Description Uncharacterized protein
SequenceMDQSQQRTLTAPSSSRSYQFHPARAKIIDLFNLYLGRGSRQKPDESARDHPPNKSQKRVHAPSRDFPPGNEQFIVDFQQLQTQFNDPDQLRAITESVSVTMVLQCSNHAPRAEFLLFALRALFRIGFVNWDTFLPSLLSSVSAAESSLNQAGSSQSLAPVVIGSPGNEQASLTPLAKDTAMRSSQRVRAAAINSLRQISCKIILIGVEFNLKPVTHAEIFQHMMSWLVSWDMREMGAEKSLSEWLRSCLEVIWLLVDEGQSRIPFYELLRSGLQFIENIPDGDEALFTLVMEIHRRRDTMAMHMLMLDQHLHCPTFGTHRISSQTPANVSAEAVAHLRYSPITYPSVLGEPLCGEDLAMSIPQGSLDWERAVRCIRHAIRTTPSPDWWKRVLVVAPGYRPSAQAGPIPGAVFTSDMICEAIIDRIVELLKLTNSDANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGADNHILRTNHVTWLLAQIIRVELVMTALNSDLKKVETTRKILSFHREDRTDPNNPQSVLLDFVSSCQNLRIWSLSATTRAYLNNDQLLKGKQIDEWWRSKGERMMDYMNLDDRSIGMFWVVSYTMAQPACETVINWLSSSGMAELPGLQPNERVMMMQEVTPLPMSLLSGFSMNLCLKLALQLEEALFVSQVVPSIAMVETYTRLLLISPHSMFRSHFTQLAQRNASLLSKPGVTLLVLEILNYRLLPLYRYQGKSKTLMYDVTKIISALKAKRGDHRIFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRITIMTLAITIKTRGIADADHLVYLQSMLEQILATSQHTWSEKTLRHFPSLLRDALNGRVDKRGLSIQAWQQAETTVINQCTQLLSPSAEPSYVMTYLSHSFPQHRQYLCAGACMLMQGHPDNVNSANLARVLREVSPEEVTANIYTLVDVLLHKVHVDLQRGHNIKEILDKHDANLAFFFWTHEMLPLDIFILALIDRDDDPHALIIAKIILERPELMQRINMYCANRGPPEHWLFTQVFKRNELQKALGNHLSWKDRYPTFFDDIAARLLPVIPLVVYRLIENNAMDTADKILTAYSHFLAYHPLRFTFVRDILAYFYGHLPGQLVVKILRVLGLSKIPFSESFPQYISNPSSPTCPPLDYFATLLLNLVNNVIPPLSSSSSSNCSSRSGSMADMLNSSSARSLHGKTPGASQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSAAQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSVLPTSPSGGSTDSMSASRSSCMNTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHTQLYMEASRVIRETWWLTDGKRSQGELDSAVGYALMDPTWAAQDNTSTAIGNIVALLHAFFSNLPQEWLDGTHLIIKNLRPVTSVALLRVVFRIMGPLLPRLANTHALFNKTLALLLSTMVDVFGKNSQTQVPVEASQIADLIDFLHHVVHYEGQGGAVQSSSKPRPDILALIGRAADSLRPDVQHLLSHLRTDPNSSIYAAAHQNTAKTNTS
Length1551
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.055
Instability index45.14
Isoelectric point7.06
Molecular weight173643.76
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03060
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     194.00|      61|     329|     994|    1059|       1
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  994- 1059 (99.65/84.08)	LIIAKIileRPELMQRINMYcANRGPPEHWLFTQvFKRN..ELQKALGNHL...SW..KDRYPTFFDDIAARL
 1328- 1395 (94.35/62.50)	LLLAQL...PPDFHTQLYME.ASRVIRETWWLTD.GKRSqgELDSAVGYALmdpTWaaQDNTSTAIGNIVALL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     339.83|     113|     340|      48|     247|       2
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   53-  190 (158.33/177.13)	NKSQKRVhaPSRDFPPGNEQFIVDFQQLQTQ.FNDPDQLRAITESVSVTMVLQcSNHAPRAEFllfalrALFRIgfvnwdtflpsllSSVSAAESSLNQAGS...SQSLAPVVIGSP..GNEQASLTP...LAKDTAMRSsqrVRAA
  257-  378 (181.51/85.43)	DEGQSRI..PFYELLRSGLQFIENIPDGDEAlFTLVMEIHRRRDTMAMHMLML.DQHLHCPTF......GTHRI.............SSQTPANVSAEAVAHlrySPITYPSVLGEPlcGEDLAMSIPqgsLDWERAVRC...IRHA
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      73.10|      21|     340|     465|     486|       3
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  465-  486 (34.10/25.15)	DKLVLrLNGADNHILRTNHVTW
  808-  828 (38.99/24.04)	DHLVY.LQSMLEQILATSQHTW
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     141.31|      46|     541|     926|     990|       4
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  926-  990 (60.20/77.83)	PEEvTANIYTLVDVLLHKVHVDLQrGHNIKEILDKHDAnlafffwthemlpldifILALIDRDDD
 1471- 1516 (81.11/50.75)	PVE.ASQIADLIDFLHHVVHYEGQ.GGAVQSSSKPRPD.................ILALIGRAAD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03060 with Med23 domain of Kingdom Viridiplantae
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