<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03058

Description Uncharacterized protein
SequenceMVVPGRRTVWDGVIELTKMAQEQCVDARLWASHLSATLKPFVEFPSTELAEVLVSYICWDNNLPLLWKFLERAMSLNLVSPLVVLALLAHRVVPNRSTQSAAYRIYLELLKRNIFRIKDHTTGPHYDNVMNSVANILRLPELFRLETSKPGVLLVEFVFKMVSLLLDACLSDEGLIEPSQDSSSQWLIKSQDMEIDAPERYNEKNGSHEKLQTLNTIMAIEMVAEFLRNTVISRLLYLVSSNRASSWHEFVRRAQVLGENSMALRSSKVLNSRDLLQLISNRRFGYSDDSKIVSLRKSNAIVDFGSLASFAGLCHGASLSSLWLPLDLVFEDAMDGYQVNPTSAIEIITGLAKTLKEINGSTWHDTFLGLWIAALRLVQRERDPIEGPIPRLDTRLCMSLCIVPLVVANLIEEGDNEFVMEKLRDDLITSLQVLGEFPGLLAPPQCVVSAANKAATKAIMFLSGGNVGKSCSDVINMKDMPINCSGNMRHLIVEACIARNILDTSAYSWAGYVNGRINQIPHNLPSEVPCWSSFVKGAPLNAAMVNALVSVPASSLVEIEKVYEVAVKGSDDEKISAATVLCGASLTRGWNIQEHTVEFLTRLLSPPVPADYSGAESHLIGYACMLNVVIFGIGSVDSIQIFSLHGMVPQLACSLMPICEAFGSYTPNVSWTLPSGEEISAYSVFSNAFTLLLKLWRFNHPPIEHGVGDVPTVGSQLTPEHLLSVRNSHLVSSETLNRDRNRKRLSEVARSASSQPVFVDSFPKLKIWYRQHQRCIASTLSGLTPGSPVHQTVEALLSMMFRKVRGSQTLNPVNSGTSSSSGAASEDIIPRPEFPAWDILKAVPYVVDAALTACTHGRLSPRELATGLKDLTDFLPASLAPIVSYFSAEVSRGVWKPVFMNGMDWPNPAANLSNVEEFIKKILATTGVDIPSLAPAGGSSPATLPLPLAAFVSLTITYKIDKASERFLNLAGPALECLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNPDAVVQLLRNCFSATLGLNAAPMSNDGGVGALLGHGFGSHFYGGISPVAPGILYLRMYRALRDTVSVTEEIFSLLIHSVEDIAQNRLSKENLKRLKTVKNGSRYGQSSLATAMTQVKLAASLSASLVWLTGGLGVVHLLIKETIPSWFLSVDKSDQEQRPSDLVAELRGHALAYFVVLCGAFAWGVDSRSAASKRRQGIMGSHLQFLANALDGKISVGCETATWRAYVSGLVSLMVSCLPRWVAEIDAEVLKSLSNGLRQWGKDELAILLLSMGGVKTMGDAVDFIIHLRS
Length1308
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy0.143
Instability index45.67
Isoelectric point6.75
Molecular weight143104.66
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03058
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     381.56|     124|     160|     978|    1127|       1
---------------------------------------------------------------------------
  978- 1127 (189.61/178.73)	LAAGCPW..PCMPIVASLWTQKAKRWFdflvFSASRTVFLHNPDAVVQLLRN.........CFSATLGLN...AAPMSNDGgvgallghGFGSHFY.......GGISpVAPGILYLRMYraLRDTVSVteeIFSLLIHSVEDIaqnrlskeNLKRLKTVKNGSR.YGQSSLA
 1139- 1284 (191.96/124.14)	LSASLVWltGGLGVVHLLIKETIPSWF....LSVDKSDQEQRPSDLVAELRGhalayfvvlCGAFAWGVDsrsAASKRRQG........IMGSHLQflanaldGKIS.VGCETATWRAY..VSGLVSL...MVSCLPRWVAEI........DAEVLKSLSNGLRqWGKDELA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     164.33|      54|     324|     598|     653|       2
---------------------------------------------------------------------------
  436-  530 (72.98/52.91)	EF.PGLLAPPqcvvsaankaatkaimflsggnvgkscsdvinmkdMPINCSGNMRHLIVEACiarnILDTSAYSWaGYVNG.RINQIpHNLPSEVPC
  598-  653 (91.35/78.73)	EFlTRLLSPP...................................VPADYSGAESHLIGYAC....MLNVVIFGI.GSVDSiQIFSL.HGMVPQLAC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.47|      46|      71|     684|     754|       3
---------------------------------------------------------------------------
  684-  737 (73.18/94.01)	VFSNAFTlLLKLWRFNHPP.IEHGVgdvptvgSQLTP........EHLLSVRNSHLVSSETLN
  757-  811 (72.29/40.43)	VFVDSFP.KLKIWYRQHQRcIASTL.......SGLTPgspvhqtvEALLSMMFRKVRGSQTLN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     199.21|      60|     827|      10|      71|       4
---------------------------------------------------------------------------
   10-   71 (102.07/79.50)	WD...GVIELTKMAQEQCVDARLWASHLSATLKPFVEFPSTELAEVlVSYICWDNNLPlLWK..FLE
  837-  901 (97.15/66.54)	WDilkAVPYVVDAALTACTHGRLSPRELATGLKDLTDFLPASLAPI.VSYFSAEVSRG.VWKpvFMN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03058 with Med33 domain of Kingdom Viridiplantae
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