<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03053

Description Uncharacterized protein
SequenceMARSFGAVVLAIILFGFLFASFSTAKEEEATTKLGTVIGIDLGTTYSCVGVYKNGHVEIIANDQGNRITPSWVAFTDSERLIGEAAKNQAAVNPERTIFDVKRLIGRKFEDKEVQKDRKLVPYQIVNKDGKPYIQVKIKDGETKVFSPEEISAMILTKMKETAEAYLGKKIKDAVVTVPAYFNDAQRQATKDAGVIAGLNVARIINEPTAAAIAYGLDKKGGEKNILVFDLGGGTFDVSVLTIDNGVFEVLSTNGDTHLGGEDFDHRIMDYFIKLIKKKHQKDISKDNKALGKLRRECERAKRALSSQHQVRVEIESLFDGVDFSEPLTRARFEELNNDLFRKTMGPVKKAMDDAGLQKSQIDEIVLVGGSTRIPKVQQLLKDFFEGKEPNKGVNPDEAVAYGAAVQGGILSGEGGDETKDILLLDVAPLTLGIETVGGVMTKLIPRNTVIPTKKSQVFTTYQDQQTTVSIQVFEGERSLTKDCRLLGKFDLTGIPPAPRGTPQIEVTFEVDANGILNVKAEDKASGKSEKITITNEKGRLSQEEIDRMVKEAEEFAEEDKKVKERIDARNSLETYVYNMKNQVSDKDKLADKLEAEEKEKIEAATKEALEWLDENQNSEKEEYDEKLKELEAVCNPIITAVYQRSGGAPGASPSEDEEDESHDEL
Length666
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.466
Instability index31.82
Isoelectric point5.08
Molecular weight73615.45
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
endoplasmic reticulum	GO:0005783	IEA:UniProtKB-KW

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-KW
ATPase activity	GO:0016887	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03053
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.68|      29|      32|     564|     595|       1
---------------------------------------------------------------------------
  564-  595 (43.14/39.95)	KERIDA..RNSLEtyvYNMKNQVSDKDKLADKLE
  599-  629 (41.54/28.89)	KEKIEAatKEALE...WLDENQNSEKEEYDEKLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.72|      16|      16|     185|     200|       2
---------------------------------------------------------------------------
  185-  200 (27.29/20.18)	AQRQATKDAGVIA.GLN
  202-  218 (20.42/13.00)	ARIINEPTAAAIAyGLD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.18|      26|      27|     386|     411|       5
---------------------------------------------------------------------------
  386-  411 (45.49/28.10)	EGKEPNKGV.NPDEA.VAYGAAVQGGIL
  414-  441 (31.69/17.43)	EGGDETKDIlLLDVApLTLGIETVGGVM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.39|      39|     197|     281|     322|       6
---------------------------------------------------------------------------
  281-  322 (55.35/55.11)	QKDISKDNKALGKLR.RECERAKRAlSSQHQVRVEIESlfDGV
  477-  516 (64.04/49.74)	ERSLTKDCRLLGKFDlTGIPPAPRG.TPQIEVTFEVDA..NGI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.00|      13|     197|     160|     178|       9
---------------------------------------------------------------------------
  133-  145 (22.42/14.39)	YIQVKIKDGETKV
  166-  178 (21.58/ 7.20)	YLGKKIKDAVVTV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03053 with Med37 domain of Kingdom Viridiplantae
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