<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03050

Description Uncharacterized protein
SequenceMTLMKPSASLDTWRDYFRRGDSDIFGIIEHAIMVADTDSPEELRSRRHTIVELLFSCQGSRCIGCDQPDLSKSGDNETNNGRKTMDTDDGAHEEDEMKLNNSQIVDEVMRIKDILLNKNDEVLSLYFNYIRGSDNFRPSVLFESLRNLTSMSITLDLIKGSEIGKAVNRLRKHGSDKISKLAKTLIEKWKEMVDQLINMPKEVSGNSSLLMYLSHYEQLLFSCPRFIIMAHAAADDGTPEFATLSIVDEAEDFPSLPHDLDFYALEPTAFELSQILDSLDCDGNICDSVEPKHERKLQSNAMKKPEGTYEANVVGRDKNNQQIKKKEAYVKPMRHSASTLDEPIRQPKQTREQMVHAIKRKPIVVADSSSYCLCSCRYKKIKGLDPEAKFKNAKRRFQEAYQQHEKAKRRRTIQVLEMPKSKKSPETAT
Length429
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.667
Instability index46.88
Isoelectric point6.62
Molecular weight48978.21
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03050
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     226.91|      55|     164|      52|     122|       1
---------------------------------------------------------------------------
   52-  106 (99.38/48.73)	ELLFSCQGSRCI.....GCDQ..PDLSKSG..DNETNNGRKTMDTDDGAHEEDEM..KLNNSQIVD
  218-  277 (70.62/30.89)	QLLFSC..PRFIimahaAADDgtPEFATLSivDEAEDFPSLPHDLDFYALEPTAF..EL..SQILD
  279-  323 (56.90/24.86)	...LDCDGN..I......CD......SVEP..KHERKLQSNAMKKPEGTYEANVVgrDKNNQQI..
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03050 with Med26 domain of Kingdom Viridiplantae
Unable to open file!