<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03049

Description Uncharacterized protein
SequenceMSNNPPQSSGAQQFRGMVPGQQGQHFVRAASQQPFHHPYGHIASSSTPPVVGFGTSGPPFPSSYSFTPSSSYAPHMHASGSVPPAANSWPAPPVTQTTTLVSPLQQTPATPTPTDPGNLTPQSASDWMEHTSADGRKYYYNKQTKQSSWEKPLELMTPLERADASTVWKEFTTAEGRKYYYNKVTKESKWTIPEDLKLAREQAELASAKRSHSEDESTSLSHIAASSSDLAVSTPVTAVVPSTSSTIPAHSTSPIPAGLAVPVIRPPPVASVTPVSAATSDTEATAMKLDNLPSQGAYESNDGAPAPNNEVDYKEISVNGKSNMTPAGDKANVEEPMMYATKQEAKAAFKSLLESVNVQSDWTWEQTTKVIVHDKRYGALRTLGERKQAFNEYLGQRKKVEAEERRWRQKKAREEFVKMLEECEELSSSMKWSKALSLFENDERFKAVDRPRDREDLFDNYIVELERKEREKAVAEHRQKMAEYRKFLETCDYIKASTQWRKIQDRLEDDERCSCLEKIDRLIGFEDYINDLEKEEEELKRVEKEHVRRAERKNRDAFRTLLEEHVAAGILTAKTYWLEYCIEVRDLPQYQAVASNLSGSTPKDLFEEITEELEKQYHEDKSRVKDAMKSRKVSMVSSWVFEDFKSALSEDLSSQPISDINLKLIYNELVERMKEKEEKEARKLQRLAEEFTNLLRTFKEINAASNWEDVKQLVEESQEYRSIGDGNVSRGLFEEYITSLQEKAKEKERKRDEEKSRKEKDKEEKEKRKERREKEREREKERSSKREESEGDVDVSEGQKEEKRKGKDRDRKHRRRHHNSDDDVSSDRDDREESKKWSSSRKHDRKKSRKHANTPESDSENRHKRQKKEQRESSRRGGGNDELEDGEVGEDGEIRL
Length896
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-1.150
Instability index57.21
Isoelectric point6.04
Molecular weight102821.68
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
cytosol	GO:0005829	IEA:EnsemblPlants
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03049
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     217.75|      37|      38|     116|     152|       1
---------------------------------------------------------------------------
   61-   92 (53.77/26.19)	PSSYSFTPSSS....YAPHMHASG.....SVPPAANSWPAP
   93-  115 (34.01/14.25)	PVTQTTTLVSP.....LQQTPA.............TPTPTD
  116-  152 (71.21/36.73)	PGNLTPQSASD....WMEHTSADGRKYYYNKQTKQSSWEKP
  153-  193 (58.76/29.21)	LELMTPLERADastvWKEFTTAEGRKYYYNKVTKESKWTIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     495.98|      65|      65|     408|     472|       2
---------------------------------------------------------------------------
  347-  413 (70.55/36.86)	AAFKSLLES...V.NVQSDWTWEQTTKVIVHDKRYGAL......RTLGE.RKQAF.NEYLGQ..R.KkvEAE.E......rrwRQK.KAR
  414-  482 (89.76/49.10)	EEFVKMLEE...CEELSSSMKWSKALSLFENDERFKAV......DRPRD.REDLF.DNYIVELER.K..ERE.K....avaehRQK.MA.
  483-  555 (73.47/38.72)	.EYRKFLET...CDYIKASTQWRKIQDRLEDDERCSCL......EKI.D.RLIGF.EDYINDLEK.E..EEElKrvekehvrrAER.KNR
  556-  631 (57.39/28.48)	DAFRTLLEEhvaAGILTAKTYWLEYCIEVRDLPQYQAVasnlsgSTPK....DLF.EEITEELEK.Q..YHE.D.....ksrvKDAmKSR
  642-  688 (31.87/12.22)	EDFKSALSE.....DLS.....SQPIS.....................DiNLKLI.YNELVE..RmK..EKE.E....kearkLQR.LA.
  689-  757 (75.42/39.96)	EEFTNLLRT...FKEINAASNWEDVKQLVEESQEYRSI......GDGNV.SRGLF.EEYITSLQE.K..AKE.K.....erkrDEE.KSR
  758-  818 (47.74/22.33)	KE..KDKEE...KEK....RKERR......EKEREREK......ERSSK.REESEgDVDVSEGQK.E..EKR.K..gkdrdrkHRR.RHH
  819-  870 (49.78/23.63)	NSDDDVSSD...RDDREESKKWSSS....RKHDRKKSR......KHANT.PESDS.EN......................rhkRQK.KEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      73.27|      21|      24|     226|     248|       3
---------------------------------------------------------------------------
  226-  246 (23.81/19.25)	...SSSdLAVSTPVTA..VVPSTSST
  248-  267 (20.18/11.94)	PahSTS......PIPAglAVPVIRPP
  268-  285 (29.28/14.74)	P......VASVTPVSA..ATSDTEAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03049 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AVSTPVTAVVPSTSSTIPAHSTSPIPAGLAVPVI
2) KAKEKERKRDEEKSRKEKDKEEKEKRKERREKEREREKERSSKREESEGDVDVSEGQKEEKRKGKDRDRKHRRRHHNSDDDVSSDRDDREESKKWSSSRKHDRKKSRKHANTPESDSENRHKRQKKEQRESSRRGGGNDELEDGEVGEDGEIRL
3) MSNNPPQSSGAQQFRGMVPGQQGQHFVRAASQQPFHHPYGHIASSSTPPVVGFGTSGPPF
4) PVASVTPVSAATSDTEATAMKLDNLPSQGAYESNDGAPAPNNEVDYKEISVNGKSNMTPAGDKANVEEPMMYA
5) SSYSFTPSSSYAPHMHASGSVPPAANSWPAPPVTQTTTLVSPLQQTPATPTPTDPGNLTPQSASDWM
6) TIPEDLKLAREQAELASAKRSHSEDESTSLSHIAASS
231
743
1
268
62
191
264
896
60
340
128
227










Molecular Recognition Features






MoRF SequenceStartStop




1) RHKRQKKEQ
862
870