<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03045

Description Uncharacterized protein
SequenceMANNPHYPGIQPFQHPNASSINLPRGFAPSMNFQHRPPIQAPQSEQVAHLASQNFQYVGRGGTTMNNGFPPQSYAPQLLQSMHHSLERPSQSNQVQHMPLGHPSLISQPNVSVASGTFLPEPYVQTSDINMNGGPRALFSHQSATSFGHLRAPTQVTGPSSHSQAQQSAPISQDNAPSSIMNPTFVHPKVASSQPIPFQEAATDWVEHTSADGRRYFFNKKTKQSTWEKPVELMTLFERADAKTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEMKIARELAENASVQGLHAEGVVHASKVLSRSDTASTAAPAGLPSQTSSTLPTSDTSEKLALTSDWEQAASVPGSSSPVENVDQVQAIADKTSELCDTAKTDNPSATVMITSAATLVDKETVSTENSGNADDVSAKNTNVLEAKPYFLLACFSPVSVYHNCSSAVQQGSGTGPEESQKHVVENERVDSQSEGKQIHQENFSYTNKSEAVDVFKSLLKSVNVGSDWTWEQAMREIINDRRYGVLRTLGERKQAFNEFLAQMRKAAEEEKIARQLKRYEDFRRMLEECVELTPSTRWSKAVTMLEDDERFKVVEREKDRRNIFEDHISDLKEKERLKAFEDRKRNIVEYRRFLESCNFIKPNSQWRKVQDRLEVDERCSRLEKIDQLEIFQEYLRDLEREEEERKKIQKEELKKAERKHRDEFRGLIDEHIATGELTAKTSWRDYLVKVKDLPVYLAIASNSSGATPKELFEDAVEDLKRKYHELKSQIKDVLKLRKVTLSTGSTFDEFRVSVSEGIGSPSIPDFKLKLVFGDLLERAKEKEEKEARKQTRNTEKLVDMLRSFKYITASSSWEDSKHLVEGTEKFRTIGDESFRKKTFEDYVSHLKEQAKRIKQNKKEHVREEHDREKDKYGREKERVRERDSRDHRKQSSADNYNHDVDELHGKERRRSGRDSHSRHRERHTSVKENEADHYKESHKAGRGHKESRQQRGLVLEAEDEGREKRRRKGESEQTKRAEKEEELEDGECGRY
Length1020
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-1.020
Instability index50.88
Isoelectric point6.78
Molecular weight116826.39
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03045
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     485.65|      65|      65|     550|     614|       1
---------------------------------------------------------------------------
  482-  547 (69.19/43.31)	DvFKSLL.KSV...NVGSDWTWEQAMREIINDRRYGVLRTLG...ERKQAFNEFLAQMrK.........AA.EEEKIARQLKR
  550-  614 (101.94/67.94)	D.FRRMLEECV...ELTPSTRWSKAVTMLEDDERFKVVEREK...DRRNIFEDHISDL.K.........EK.ERLKAFEDRKR
  618-  690 (80.55/51.85)	E.YRRFLESCN...FIKPNSQWRKVQDRLEVDERCSRLEK.I...DQLEIFQEYLRDL.EreeeerkkiQK.EELKKAERKHR
  691-  760 (60.17/36.52)	DeFRGLIDEHIatgELTAKTSWRDYLVKVKDLPVYLAIASNSsgaTPKELFEDAVEDL.K.........RK...YHELKSQIK
  778-  826 (45.84/25.74)	E.FRVSVSEGI...G.SPSIPDFKLKLVFGD.....LLERAK...EKEE..KEARKQT.R.........NT.EKL........
  827-  888 (70.66/44.41)	...VDMLRSFK...YITASSSWEDSKHLVEGTEKFRTIGDES...FRKKTFEDYVSHL.K.........EQaKRIK..QNKKE
  889-  943 (57.30/34.36)	H.VRE..EHDR...EKDKYGREKERVR..ERDSR...DHRKQ...SSADNYNHDVDEL.H.........GK.ERRRSGRD...
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     140.15|      36|      39|     198|     233|       2
---------------------------------------------------------------------------
  198-  233 (71.59/41.54)	FQ..EAATDWVEHTSADGRRYFFNKKTKQSTWEKPVEL
  237-  274 (68.56/39.49)	FEraDAKTDWKEHSSPDGRKYYYNKVTKQSTWTMPEEM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      98.22|      19|      19|      15|      33|       3
---------------------------------------------------------------------------
   15-   33 (33.46/19.74)	H......PNASSINLPRG......FAPSMNF
   35-   55 (19.00/ 8.12)	HrppiqaPQSEQV....A......HLASQNF
   57-   71 (20.17/ 9.06)	Y......VGRGGTTMNNG......FPP....
  123-  147 (25.60/13.42)	Y......VQTSDINMNGGpralfsHQSATSF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.92|      24|      26|     313|     337|       4
---------------------------------------------------------------------------
  313-  337 (35.12/22.90)	AGLPSqTSSTLPTSDTSEKLA.LTSD
  342-  366 (29.79/14.85)	ASVPG.SSSPVENVDQVQAIAdKTSE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     106.84|      27|      27|     965|     991|       5
---------------------------------------------------------------------------
  945-  963 (23.16/ 8.20)	........HSRHRERHTSVKENEADHY
  965-  991 (42.79/21.21)	ESHKAGRGHKESRQQRGLVLEAEDEGR
  993- 1019 (40.89/19.95)	KRRRKGESEQTKRAEKEEELEDGECGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.42|      35|      84|      72|     109|       6
---------------------------------------------------------------------------
   72-  109 (61.19/50.56)	QSYAP....QLLQSMHHSLER.PSqsnQVQHMPLGHPSLI.SQP
  155-  195 (49.23/32.08)	QVTGPsshsQAQQSAPISQDNaPS...SIMNPTFVHPKVAsSQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     136.18|      45|      63|     368|     415|       7
---------------------------------------------------------------------------
  368-  415 (64.27/52.15)	CDTAkTDNPSATVMITSAATLVDKETVSTENSGNadDVSAKN...TNVLEA
  433-  480 (71.91/47.06)	CSSA.VQQGSGTGPEESQKHVVENERVDSQSEGK..QIHQENfsyTNKSEA
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03045 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AEGVVHASKVLSRSDTASTAAPAGLPSQTSSTLPTSDTSEKLALTSDWEQAASVPGSSSPVENVDQVQAIADKTSELCDTAKTDNP
2) HLKEQAKRIKQNKKEHVREEHDREKDKYGREKERVRERDSRDHRKQSSADNYNHDVDELHGKERRRSGRDSHSRHRERHTSVKENEADHYKESHKAGRGHKESRQQRGLVLEAEDEGREKRRRKGESEQTKRAEKEEELEDGECGRY
3) INMNGGPRALFSHQSATSFGHLRAPTQVTGPSSHSQAQQSAPISQDNAPSSIMNPTFVHPKVASS
4) MANNPHYPGIQPFQHPNASSINLPRGFAPSMNFQHRPPIQAPQSEQVAHLASQNFQYVGRGGTTMNNGFPPQSYAPQLLQSMHHSLERPSQSNQVQHMPLGHPSLIS
5) SAVQQGSGTGPEESQKHVVENERVDSQSEGKQIHQEN
6) TVMITSAATLVDKETVSTENSGNADDVSAK
291
874
129
1
435
379
376
1020
193
107
471
408










Molecular Recognition Features






MoRF SequenceStartStop




1) RGLVLEAEDEGREKRRRKG
980
998