<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03044

Description Uncharacterized protein
SequenceMEGENVTEPLNTAAPSTGEGIFATAPPPSDSVLATAASSVSPSSKSQPEQSSMSIAVSQSVSSSLTAQSSANPIPQAPHMLQNPPFGRPGTLAPPGLMTSPPAFPGSNPFSTIPRPGGPAQINPGIHPHMYPPYHSMPPMHGTPQGMWLQPRPMDGIPRAHFPSHPTPFHGNYPFPVRGASPHLPYPGSQPLPVGNTGTVHALPGHQPLDVPPGQKPEALSGIDDRAGSQLVGNRVDAWTAHKSETGVVYYYNSVTGQSTYEKPPGFEREPDKVPVQPIPISMENIHGTDWALVSTNDGKKYYYNNKTKVSSWQIPPEVKDLVKKTEERSTESLVSVPSADLTEKGSEQSSLSAPAINNGGRDAVSLRTTIVPGFSALDLVKKKLHDSGVPVSSTTTSEANGGKSNEVTPSGESGDGMGKVKDAPGGGDLSDSTSDSEDEDSGPSKEECIKQFKEMLKERGVAPFSKWEKELPKIIFDPRFKAIQSHSVRRSLFEQYVKTRAEEERREKRAAHKAAVEGFKQLLDEASKAHFFLLNRVPLYFWATLRDIFLFFFGFGCFLTRTSLVGIYYHPDIFQDIDKHTDYHIFKKKWGNDLRFESLERKEREALLNERILSLKRAADQKAQEIRAAAASDFKTMLHEREVSINSHWSKVKDSLRNDPRYRSAAHEDREVFYNEYIAELKAARGDDYEMKSRGEEDKLRERERELRKRKEREVLEVERVRQKIRRKEAVASYQALLVEKIRDPEASWTESKPKLERDPQKRALNPDLDPADKEKLFRDHIKTLYERCARDFKALLVEVLSSEAASQQTEEAKTVLNSWSTAKQVLKSDIRYSKMPRDDREVIWRRYAEDILRKQKQDSPQKEEKPRDYKI
Length873
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.786
Instability index49.55
Isoelectric point8.05
Molecular weight97805.70
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03044
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     115.32|      25|      26|      85|     109|       2
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   85-  105 (37.59/16.05)	.................................PFG.....RPGTLA.P..PGLMTSPPAFP
  106-  132 (31.51/12.20)	GSNP................................fstipRPGGPA.QinPGI..HPHMYP
  188-  204 (23.39/ 7.06)	GSQP...........................................lP..VGNTGTVHALP
  222-  275 (22.82/ 6.70)	GIDDragsqlvgnrvdawtahksetgvvyyynsVTG.....QSTYEK.P..PGFEREPDKVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     474.68|     100|     170|     600|     699|       3
---------------------------------------------------------------------------
  452-  497 (35.38/13.76)	...........................................QFKEML.............KER....GVAPFSKWEKELPKIIFD.PRFKAiQSHSV.................RRSLFEQY.......................
  499-  595 (80.51/39.85)	.......................KTRAEEERREKRAahkAAVEGFKQLL.............DEA....S...KAHF.....FLLNRvPLYFW.ATLRDiflfffgfgcfltrtslVGIYYHPDIFQ.DIDKHTDYHIfkKKWGNDL
  600-  699 (164.78/88.57)	LE.....RKEREALLNERILSL.KRAADQKAQEIRA...AAASDFKTML.............HER....EVSINSHWSKVKDSLRND.PRYRS.AAHED.................REVFYNEYIAELKAARGDDYEM..KSRGEED
  704-  768 (74.16/36.18)	RErelrkRKEREVLEVERV.......R.QKIR..RK...EAVASYQALL.............VEKirdpEAS....WTESKPKLERD.P...................................................QKRALNP
  770-  870 (119.85/62.59)	LD.....PADKEKLFRDHIKTLyERCA...............RDFKALLvevlsseaasqqtEEA....KTVLNS.WSTAKQVLKSD.IRYSK.MPRDD.................REVIWRRYAEDILRKQKQDSPQ..KEEKPRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.82|      15|      51|     239|     253|       4
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  239-  253 (30.13/18.76)	WTAHKSETGVVYYYN
  291-  305 (29.69/18.39)	WALVSTNDGKKYYYN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     113.13|      26|      35|     371|     396|       5
---------------------------------------------------------------------------
  315-  341 (31.71/17.97)	IPP.EVK..DLVKKteeRSTESLVSVPSAD
  371-  396 (44.18/28.15)	IVP.GFSALDLVKK...KLHDSGVPVSSTT
  408-  434 (37.23/22.48)	VTPsGESGDGMGKV...KDAPGGGDLSDST
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03044 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HDSGVPVSSTTTSEANGGKSNEVTPSGESGDGMGKVKDAPGGGDLSDSTSDSEDEDSGPSKEECI
2) IPPEVKDLVKKTEERSTESLVSVPSADLTEKGSEQSSLSAPAINNGGRDAVS
3) MEGENVTEPLNTAAPSTGEGIFATAPPPSDSVLATAASSVSPSSKSQPEQSSMSIAVSQSVSSSLTAQSSANPIPQAPHMLQNPPFGRPGTLAPPGLMTSPPAFPGSNPFSTIPRPGGPAQINPGIHPHMYPPYHSMPPMHGTPQGMWLQPRPMDGIPRAHFPSHPTPFHGNYPFPVRGASPHLPYPGSQPLPVGNTGTVHALPGHQPLDVPPGQKPEALSGIDDRAGSQLVGNRVDA
386
315
1
450
366
238










Molecular Recognition Features






MoRF SequenceStartStop




1) QKEEKPR
863
869