<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03040

Description Uncharacterized protein
SequenceMSSELKQLIVVVEGTAALGPYWQTIVSDYLLKIIRSFCGTALNGERNPVSNVELSLVIFNSHGSYCACLVQRSGWTKDVNIFFNWLSSIQFAGGGFNEAATAEGLAEALMMFSPPSGQAQPSNDLKRHCILITASNPYSLPTPVYRPKLQNPERYENGHAQSESRLSDAETVASYFSRCSVSLSVVCPKQLPKIRALYNAGKLNPQSADLSIDTVKNAFYLVLISENFVEARAALSHSATNLPQTTQSPVKVDRATVAPSLPVTGQPLAPVPSANGPIMSRQPVSVGPVPIATVKVEPSTVSSMAAVPTFPHIPSVAGPATQAIPSVQTSSASPVSHEMVTKAENAPDVKPVVGGMTPQLRTGPPGGANVNLLNNLSQVRQVMSSAALAGASSSGQSAVAMHMSNMISTGMATSLPPSQTAFSSGQQGNTSTAGSGALAGTEQAGQSPAPNNAFSPQTTSNVASNLGVSQPMQGMNQGSHSGAQMMQSGISMNQNMISGIGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSSPNVQLSQPSSGAMQPSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRSASASDSLAANWPPNMQIVRLISQDHMNNKQYVGKADFLVFRAMSQHGFLGQLQDKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQIQNQQQQLLQQQQQIQQQQQIQQQQQQQQQQIQQQQQHHHQQQQLPQLQQQQHQMSQLQHHQQQQLSQLQHHHQQQQTSPLNQMQQQTSPLNQMQQQQQPQQMVGSGVMGGQAFGQAPGRSQQGGGGGGQPTMPGAGFMG
Length817
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.380
Instability index60.20
Isoelectric point9.09
Molecular weight86985.96
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03040
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     152.34|      16|      16|     682|     697|       1
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  682-  697 (33.56/10.64)	QQQLLQQQQQIQQQQQ
  699-  714 (34.47/11.14)	QQQQQQQQQQIQQQQQ
  719-  734 (30.10/ 8.73)	QQQLPQLQQQQHQMSQ
  739-  754 (28.42/ 7.80)	QQQQLSQLQHHHQQQQ
  755-  770 (25.79/ 6.35)	TSPLNQMQQQTSPLNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.21|      13|      16|     787|     801|       3
---------------------------------------------------------------------------
  787-  801 (20.55/14.27)	GGQAfgQAPGRSQQG
  805-  817 (27.66/12.57)	GGQP..TMPGAGFMG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     212.71|      46|      49|     352|     397|       4
---------------------------------------------------------------------------
  352-  397 (78.64/29.60)	VVGGMTPQLRTG.....PPGGANVN.....LLNNL..SQVRQ....VMSSAALAGASSSG....QS
  399-  447 (50.29/16.33)	VAMHMSNMISTGmatslPP..SQ.........TAF..SSGQQgntsTAGSGALAGTEQAG....QS
  450-  488 (43.63/13.21)	PNNAFSPQ...........TTSNVA.......SNLgvSQPMQ....GMNQ.....GSHSGaqmmQS
  492-  535 (40.14/11.58)	....MNQNMISG......IGQGNVSsgtggMMPTP..GVGQQ....AQSGIQQLGGSNSS......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      85.93|      21|      83|     242|     262|       5
---------------------------------------------------------------------------
  242-  262 (37.05/16.16)	LPQTTQSP.....VKVDRATVA.PSLP
  282-  306 (24.28/ 8.30)	QP.VSVGPvpiatVKVEPSTVS.SMAA
  307-  327 (24.59/ 8.49)	VPTFPHIP.....SVAGPATQAiPSV.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      33.46|      12|      19|     627|     644|       6
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  627-  639 (16.98/ 6.68)	SQhGFLGQLQDKK
  648-  659 (16.47/ 9.03)	SQ.TLLLSVSDKA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.27|      36|      40|     139|     176|       8
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  139-  176 (57.63/46.77)	SLPTPVYRPKlQNPE.R..YENGHAQSES.RLSdAETVASYF
  180-  219 (50.63/31.69)	SVSLSVVCPK.QLPKiRalYNAGKLNPQSaDLS.IDTVKNAF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03040 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGPATQAIPSVQTSSASPVSHEMVTKAENAPDVKPVVGGMTPQLRTGPPGGANVNLLNNL
2) QQQQQIQQQQQHHHQQQQLPQLQQQQHQMSQLQHHQQQQLSQLQHHHQQQQTSPLNQMQQQTSPLNQMQQQQQPQQMVGSGVMGGQAFGQAPGRSQQGGGGGGQPTMPGAGFMG
3) SAVAMHMSNMISTGMATSLPPSQTAFSSGQQGNTSTAGSGALAGTEQAGQSPAPNNAFSPQTTSNVASNLGVSQPMQGMNQGSHSGAQMMQSGISMNQNMISGIGQGNVSSGTGGMMPTPGVGQQAQSGIQQLGGSNSSSPNVQLSQPSSGA
317
704
397
376
817
548










Molecular Recognition Features






MoRF SequenceStartStop




NANANA