<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03039

Description Uncharacterized protein
SequenceMDQSQQERTVGAPSSSRSYQFHPARAAIVDLFNLYLGRGNLQKPDEPIRDPPNKSQKRVHAPVRDLPPRNDQFIVDFEKLQTQFNDPDQLRAITESVVISMVLQCSNHAPRAEFLLFALRTLCRIGCVNWDTFLPSLLSSVSAAEASLSQAATAAATPSQSLVPVGVGSPGNEPTALSKSLDVSANVQQIDMRNNSQRVKAAAINSLRQLSCKIILIGVEFNLKPATHAEIFQCMMSWLVNWDKSDDSPGKTWRSEKSLAEWLRSCLEVIWLLVDVGKFKIPFYELLRSGLQFIENIPDDEALFALVMEIHRRRDAMAMHMLMLDQHLHCPTFGTHRISSPTTANVSAEAVAHLRYSPITYPSVLGEPLSGEDLAMSVPQGSLDWERAVRCIKHAIRTTPSPEWWKRVLVVAPCYRPSAQAGPIPGAVFTSEMICEAIIDRIVELLKLTNSDANCWQEWLVFSDIFFFLIKSGCTDFVDFIDKLVLRLNGDDNHILRTNHVTWLLAQIIRVELVMTALNSDPRKAETTRKILSFHREDRADPNNPQSVLLDFVSSCQNLRIWSLSATTRAYLNNEQLLKGKQIDEWWRSKGERMMDYMNLDDRSIGMFWVVSYTMAQPACETVINWLSSAGVAELLPGVPPNERSMMMQEVSPLPMSLLSGFSMNLCLKLALQMEEALFVNQLVVPSIAMVETYTRLLLISPHSMFRSHFTQIAQRNASLLSKPPVTLLVLEILNYRLLPLYRYQGKTKSLMYDVTKILSALKLKRSDHRVFRLAENLCMNLILSLRDFFSVKRDQKGPTDFTETLSRITIMTLAITIKTRGIADADHLVYLQTMLEQVLATSQHTWSEKTLRHFPSLLRDALIGRVDKRGLSIQAWQQAETTVLNQCTQLLSPAAEPSYVMTYLSHSFPQHRQYLCAGACLLMQGNPDKINSANLARVLREVTPDEVTANIYTFVDVLLHNVHVDLQRGHGLEEILNKNDANLAFFFWTHEMLPLDIFLLALIDRDDDPHALIIAKRILERPELLQRINVFCVNRGNPEHWLCTQVFKRNELQNALGNHLSWKDNRYPTFFDDIAARLLPVIPLVVYRLIENNAMDTADKILTAYSNFLAYHPFRFTFVRDILAYFYGHLPGQLVVKILRVLGLSKIPFSESFPQYITHTGPATCPPLDYFANLLLNLVNNVVPPLSSSSSNCSSRSGSMADILNTSSRPPHGKTPGASQPGPANASEGQKAFYQIQDPGTYTQLVLETAVIEILSLPVSPTQIVSSLVQIIVNIQSTLIQSGNGFHGAANGVGQGSSVLPTSPSGGSTDSMSASRSSCMNTASFVSRSGYTCQQLSCLLIQACGLLLAQLPPEFHTQLYVEASRVTRETWWLSDGKRSQGEVDSAVGYALMDPTWAAQDNTSTAIGNVVALLHAFFSNLPQEWLDGTHLIIKNLRPVTSVAMLRVAFRIMGPLLPRLANTHALFNKTLALLLSTMVDVFGKISQTPVPVEASQIADLIDFLHHVVHYEGQGGAVQSSSKPRPDTLALIGRAADSLRPDVQHLLSHLRNDPNSSIYAAAHQNTAKTNTF
Length1570
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.08
Grand average of hydropathy-0.049
Instability index43.96
Isoelectric point6.85
Molecular weight175398.68
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03039
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.72|      21|     109|     662|     682|       1
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  662-  682 (36.54/25.54)	FSM..NLCLKLALQMEEALFVNQ
  772-  794 (32.18/21.52)	FRLaeNLCMNLILSLRDFFSVKR
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.10|      18|     423|     908|     925|       4
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  908-  925 (36.76/22.48)	SFPQHRQYLCAG.ACLLMQ
 1325- 1343 (30.34/17.31)	SFVSRSGYTCQQlSCLLIQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     128.88|      36|     423|     204|     239|       5
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  204-  239 (64.56/34.88)	INSLRQLSCKIILIGVEFNLKPATHAEIFQCMMSWL
  624-  659 (64.32/34.73)	INWLSSAGVAELLPGVPPNERSMMMQEVSPLPMSLL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.88|      22|     181|     271|     297|       6
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  271-  297 (35.52/34.62)	WLLvdvgkFKIPFYELLRSG.LQFIENI
  459-  481 (37.36/23.74)	WLV.....FSDIFFFLIKSGcTDFVDFI
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     165.93|      47|      66|    1177|    1226|      10
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 1177- 1214 (56.48/29.02)	............................LNLV....NNVVPPLSSSSSNCSSRSGSMADILNTSSRPPHG
 1218- 1283 (59.88/36.00)	GASQPGPANasegqkafyqiqdpgtytqLVLE....TAVIEILSLPVSPTQIVSSLVQIIVNIQSTLIQS
 1284- 1323 (49.57/21.77)	GNGFHGAAN.......................gvgqGSSVLPTSPSGGSTDSMSASRSSCMNT.......
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     244.17|      71|     540|     944|    1016|      11
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  944- 1016 (114.51/104.54)	TPDEVTA.NIYTFVDVLLHNVHV.DLQRG...HGL.EEILNKNDANLAF...FFWTHEMLPLDI.FLLALIdRdDDPHALIIA
 1025- 1069 (21.30/ 8.45)	................LLQRINVfCVNRGnpeHWLcTQVFKRNELQNALgnhLSWKDNRYP......................
 1487- 1558 (108.35/87.46)	TPVPVEAsQIADLIDFLHHVVHY.EGQ.G...GAV.QSSSKPRPDTLAL...IGRAADSLRPDVqHLLSHL.R.NDPNSSIYA
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.10|      27|      57|    1388|    1414|      14
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 1388- 1414 (46.54/25.13)	VGYALMDPTWAAQDNTSTAIGNVVALL
 1447- 1473 (45.57/24.47)	VAFRIMGPLLPRLANTHALFNKTLALL
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03039 with Med23 domain of Kingdom Viridiplantae
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