<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03032

Description Uncharacterized protein
SequenceMAPSVNNGEPAMDTNDWRNHLPFDSRQKIVSKIMATLMKHLSYSGPEGINELKRIAVRFEEKVFSSAVYQTDYLRKISMKMLTMETRSQNVAGSASYIPADRSNLALDELDNLMINGNVEPFLLNEEPAINSGDWRTQLPPGSRQNIVNKIMDTLKRHFPYSGPEGINELKRIAARFEEKIFSSAVNQTDYLRKISMKMLTMETKAQNAAGSDSSILADSNNLTLDIISKQRPSWNHLIKDNAETSLLNVEPTINSGDWRIQLPLDSRQKNIDKLMETLKKHVPYSGQEGIEELRRIALSFEELIFNTAINQDTHLMGPSCPNGEPAIDTLDWRTQLQSDARESIVNMITEALKKQHLPFSGPEGVNEHSKIASRFEDKVFNNAANLNDYLRKISLEVLTIENTVKNAAEPTTPLNSSAGKANVDVGSLMDNNSLRPSYLPNREPAVDTGDWRTQLPPATRRMIVNNITDTLVKHHSGTERTNELRGFAARLEENIFNTADHQIDYLRQISAKISLLAASNSLPLDLGNLGINRGDWRTQHPPGSRQKNVNKLLETLKKHVPYSGKEGIEELMRIAVSFEELIFNTARNQVCIRRKEHLMDNNNWRPSVPKGEPGDWRNQLPQHLMSQQNSLHQRSLAGLQQPQQQLLISQTNQQSVHMLSQPTVGLQPTHQAAHGLFLFQGQQSHHQQPNLLQQDVQQRLQSSGQVTGSLLPPQNVVDQQRQLYQSQRTLPEMPSSLVDSTAQMESVNGVDWQEEVYQKIRTINEKYLAELHDIYQSASAKLEQQYSLPQQQRLKEFEKLKKFKIMLERMMRFLLISKSNIRPALKDNVDFYETQIISFLNRHRPRKPVQQGQLPQPQMQPVKQQSSQNGNLAINTVDWRTLHPPASRQKNVNTLLERLKKHVPYSGQEGIEELMRIAVSFEELIFNTAKNQVDYLCRISLKMQSMEEGS
Length951
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.658
Instability index48.15
Isoelectric point8.35
Molecular weight108292.40
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03032
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
            10|     829.23|      55|     276|     258|     312|       1
---------------------------------------------------------------------------
   16-   70 (102.22/57.26)	DW..RNHLP..FDSRQKIV.SKI.MATLMK.H.....LSYSGPEGINELKRIAVRFEEKVFSSAVYQ
   75-  117 (31.73/13.12)	..............RKISM.KMLtMETRSQ.N.....V..AGSASYIPADRSNLALDELD.NLMING
  134-  188 (110.61/62.51)	DW..RTQLP..PGSRQNIV.NKI.MDTLKR.H.....FPYSGPEGINELKRIAARFEEKIFSSAVNQ
  190-  239 (28.61/11.16)	DYlrKISMK..MLTMETKA.QNA.AGSDSS.I.....LADSNNLTLDIISKQRPSWNHLI.......
  258-  312 (108.55/61.22)	DW..RIQLP..LDSRQKNI.DKL.METLKK.H.....VPYSGQEGIEELRRIALSFEELIFNTAINQ
  332-  387 (88.48/48.65)	DW..RTQLQ..SDARESIV.NMI.TEALKKqH.....LPFSGPEGVNEHSKIASRFEDKVFNNAANL
  451-  503 (92.16/50.96)	DW..RTQLP..PATRRMIV.NNI.TDTLVK.H.......HSGTERTNELRGFAARLEENIFNTADHQ
  536-  590 (112.74/63.85)	DW..RTQHP..PGSRQKNV.NKL.LETLKK.H.....VPYSGKEGIEELMRIAVSFEELIFNTARNQ
  616-  675 (45.93/22.01)	DW..RNQLPqhLMSQQNSLhQRS.LAGLQQ.PqqqllISQTNQQSVHMLSQPTVGLQPT..HQAAH.
  879-  933 (108.19/60.99)	DW..RTLHP..PASRQKNV.NTL.LERLKK.H.....VPYSGQEGIEELMRIAVSFEELIFNTAKNQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.62|      13|     314|       1|      14|       2
---------------------------------------------------------------------------
    1-   13 (27.31/13.39)	MAPSVNNGEPAMD
  121-  131 (16.46/ 6.84)	..PFLLNEEPAIN
  317-  329 (30.84/16.77)	MGPSCPNGEPAID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      63.51|      16|     167|     429|     445|       3
---------------------------------------------------------------------------
  429-  445 (28.39/22.21)	LMDNNSLRPSyLPNREP
  599-  614 (35.12/21.98)	LMDNNNWRPS.VPKGEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.21|      22|     165|     683|     706|       4
---------------------------------------------------------------------------
  683-  704 (39.27/24.36)	QQSHHQQPNLLQ.QDVQQRLQSS
  715-  737 (34.94/14.77)	QNVVDQQRQLYQsQRTLPEMPSS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.98|      11|     427|     504|     514|       6
---------------------------------------------------------------------------
  504-  514 (19.68/13.25)	IDYLRQISAKI
  934-  944 (21.29/14.94)	VDYLCRISLKM
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03032 with Med15 domain of Kingdom Viridiplantae
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