<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03031

Description Uncharacterized protein
SequenceMFILLPKPTKVVACIYVLVSFPSEHIPFSLQMDSVPQQRRSEQFEKLKQFKAAVERMIQFLSVSKSNIIPALKDKVAIYEKQIIDLVNMLRPRNPVQQGQLPESQMQPIQQQSSRGMFSSQGQQQSQNQPSQQQMMPLQSHRQQLRLQEQSNLLQQDVQQRLQSSGQVTGSLLPPQNVGDQRRQLYQSQRTLPEIPSAFLDSMAQTESGYGVDWQEEIFQKIKTLKDAYFSDLTEIDQRVGAKLQQYSLPQQQRSEEFEKLKRVKTMLERMIQIISVSKRNIMPALKEKVAFYEKQIILFVNVYKGSKPVQQEQLPESQMQPMQQQSSPHGNLAVNRGDWRALHPPGSRQKNVNTLLETLKKHVPYSGEEGIEELMRIAVSFEELIFNTAKDQMDYFCKISLKMQSMEEGS
Length411
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.633
Instability index75.47
Isoelectric point9.16
Molecular weight47474.94
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03031
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     429.60|     105|     213|      30|     134|       1
---------------------------------------------------------------------------
   30-  134 (192.57/99.64)	LQMDSVPQQRRS.EQFEK.LKQFKAA.VERMIQFLSVSKSNIIPALKDKV.AIYEKQIIDLVNM.LRPRNPVQQGQLPESQMQPIQQQSS.RGMFS.SQGQQQSQNQPSQQQ
  173-  246 (67.09/29.85)	LPPQNVGDQRRQlYQSQRtLPEIPSAfLDSMAQTESGYGVDWQEEIFQKIkTLKDAYFSDLTEIdQRVGAKLQQ......................................
  248-  350 (169.94/87.05)	....SLPQQQRS.EEFEK.LKRVKTM.LERMIQIISVSKRNIMPALKEKV.AFYEKQIILFVNV.YKGSKPVQQEQLPESQMQPMQQQSSpHGNLAvNRGDWRALHPPGSRQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03031 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NPVQQGQLPESQMQPIQQQSSRGMFSSQGQQQSQNQPSQQQMMPLQSHRQQLRL
2) QQEQLPESQMQPMQQQSSPHGNLAVNRGDWRALHPPGS
94
311
147
348










Molecular Recognition Features






MoRF SequenceStartStop




NANANA