<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03030

Description Uncharacterized protein
SequenceMSSSSNDEVYEVFEEMVDQQIDDFIDSVLTKEPKRRAYIERDREQGHNQLWQDYFSENPTYTHDMFRRRFRMNKSLFLRIVERLGNEIPYFQQRRNGHGRNGLSTLQKCSSAIRSLAYGQAGDVNDEYLRLAASTAILCLENFAEAIIQLFGDEYLRRPTTEDLQRLLDVGEARGFPGMIGSIDCMHWEWKNCPTAWKGTLNDINVLDRSPVFDDILQGRAPKVKFKVNNHTYRMTYYLTDGIYPNWATFIQSIPLPQGPKAQKFAEKQESVRKDVERAFGVLQSRFAIVKNPALKWDNEKIGKIMRTCVILHNMIVEDERHRYTLADTSEFESGESSRSAKEHLMDNNNWRLSIPNGESAAMNNGEWRKQLPPDSRQKIVNKIMETLSRHLPNSGPEGIIDLRRIAARFEEKIFSCAVNQTDYLRKISMKMLTMETKSQNAAGSSSTTPDANNTTSMDSIPNNQGQLLPGTLPNNQSQAPQPLMSQTIQSNTASGITGSTGLPSSMPPVSSIANNSVVNQNSSMQNVAGLLQDSSGQHGVSSNMLSGSQRQMLGRPPHTLSSQQQQPQGAQYLYQQQQLLRQNFQAGNVPNPNSLLPTHIQQQQQQNVLQPNQMHSSQQPASTTSATQPSAVSSAPIQGLHTNQQSSPQLSSQQTTSQTILRQQQSSLLRQHPQSQQSSGIHQQQTSLPQQSISPQQQAQMMRQQAASGSGIQQKQMMGQHVLGDMQHQHQQRLLNQQNNVMNMQQQQKQHPPAQQQLMSQQNSLQATTQQPLGTQSNVAGLQQPQQQLLSSQVGNSSLQTNQQSLHMLSQPTAALQRTHQAGHGLYPSQGQQSQNQPAQQQMVPLQSHRQQLQQPNLVQQDVQQRLLSSGQVAGSLLPPQNVVDQQRQLYQSQRTLLEMPSSSLDSTAQTESGNAVDWQEEVFQKIKTMKDAYLPDITEIYQRVIAKLQQMDSLPQQQRSEQFEKLKQFKTMLERMMQFLSVSKSSIMPPLKNKVAIYEKQIIDFVTAHRPRKPVQQGQLPQSQMQPMQQQSSQNGNHSHDGQANPQMQSMSMPRAQQSSLEIVQNNVLSSRPGASAPQQNIHSSVPASSLESGQGNALNNGQQVAMRSIQQNTYQQVNNTSASAQSGLSTLQPNVNQTQLSSGLLQQQKDQQMTQQQQLKQQFQQRQMQQQQQQLLQKQRLMQQHQEQLQARQQVAQNDLKPGSQLPVTSPQLLPGSSPQMTQQHSSPQIDQKNMMSSVNKMGTPVQPANSPFVVPSPATPVAPSPMQVDSEKPSGASSLSMGNTARQQATGVQGVVQSIAFGTPGISASPLLQEFTSPEGNNLNPLTSTFGKPSATELPIERLIRAVKSISPQSLSSAVSDIGSVVSMVDRIAGSAPGNGSRASVGEDFVAKTKCRLQARNFMAQEGMTPTKKMKRHATAMPLSVYSLGGSVGDNCKQFACSETSDLESTATSVGKKARTETEHALLEEIKEINQRLIDTVVEISDEEDATDSSEGATASKGCEGTTVRFSFIAVSLSPALKAHFSLTQMSPIQPLRLLVPCSYPNGSPSLLDKLPVETSKENEDLSSKAVARFNILLRSLSQPMSLKDIATTWDACARTVICEYAQQFGGGTFSSKYSTWEKFVAAS
Length1632
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.700
Instability index65.35
Isoelectric point8.88
Molecular weight180969.73
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
hydrolase activity, acting on ester bonds	GO:0016788	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03030
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     173.51|      32|      32|     598|     629|       6
---------------------------------------------------------------------------
  574-  614 (39.05/10.31)	LYQQQQllrqnfQAGNVPNPNsllPTH..IQQQQQQNVL..QPNQ
  615-  639 (37.15/ 9.42)	MHSSQQ......PASTTSATQ...PSA..VSS.........APIQ
  641-  676 (30.76/ 6.46)	LHTNQQ......SSPQLSSQQ...TTSqtILRQQQSSLLrqHPQS
 1084- 1113 (34.39/ 8.14)	IHSS.V......PASSLESGQ...GNA...LNNGQQVAM..RSIQ
 1187- 1216 (32.15/ 7.10)	QHQEQL......QARQ.QVAQ...NDL..KPGSQL.PVT..SPQL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     148.21|      26|      43|    1269|    1294|       7
---------------------------------------------------------------------------
  728-  743 (26.49/ 6.65)	QHQHQQRLL...N.......QQNN...............VM
  755-  776 (33.50/10.61)	A...QQQLMSQQNSLQATT.QQPL...............GT
  861-  881 (29.54/ 8.38)	QQDVQQRLLSSGQVAG.....SLL...............PP
 1232- 1270 (29.18/ 8.17)	QID.QKNMMSSVNKMG.TPVQPANspfvvpspatpvapsPM
 1271- 1294 (29.51/ 8.36)	QVDSEKPSGASSLSMGNTARQQAT.................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      55.22|      16|      30|     883|     898|       8
---------------------------------------------------------------------------
  883-  898 (29.72/12.36)	NVVDQQRQLYQSQRTL
  916-  931 (25.50/ 9.49)	NAVDWQEEVFQKIKTM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.88|      28|      30|    1305|    1332|       9
---------------------------------------------------------------------------
 1305- 1332 (49.38/31.91)	FGTPGISASP...LLQEFTSPEGNNLNPLTS
 1334- 1364 (40.50/24.58)	FGKPSATELPierLIRAVKSISPQSLSSAVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      71.49|      21|      30|     126|     146|      10
---------------------------------------------------------------------------
  126-  146 (35.18/26.43)	DEYLRLAASTAILCLENFAEA
  153-  173 (36.32/27.54)	DEYLRRPTTEDLQRLLDVGEA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.72|      27|      31|     469|     497|      11
---------------------------------------------------------------------------
  469-  496 (39.64/22.38)	......LPGTLPNNQSQAPQPLMSQTiqSNTASG
  497-  524 (28.72/10.00)	ItgstgLPSSMPPVSSIANNSVVNQN......SS
  525-  548 (31.35/11.70)	M...qnVAGLL...QDSSGQHGVS....SNMLSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.42|      29|     115|    1426|    1455|      12
---------------------------------------------------------------------------
 1426- 1455 (48.20/32.57)	PLSvYSLGG.SVGDNCKQFACSETSDLESTA
 1545- 1574 (47.22/27.48)	PCS.YPNGSpSLLDKLPVETSKENEDLSSKA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.96|      15|      20|     264|     283|      14
---------------------------------------------------------------------------
  264-  278 (24.37/22.67)	KFA.EKQESVRKDVER
  286-  301 (22.59/ 7.66)	RFAiVKNPALKWDNEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.06|      11|      15|     346|     356|      17
---------------------------------------------------------------------------
  346-  356 (22.94/10.67)	MDNNNWRLSIP
  363-  373 (23.12/10.80)	MNNGEWRKQLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.05|      13|      15|    1116|    1130|      18
---------------------------------------------------------------------------
 1116- 1130 (19.62/12.34)	TYQ.QVNNTSASaqSG
 1133- 1146 (19.43/ 6.61)	TLQpNVNQTQLS..SG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.36|      12|     106|     842|     856|      21
---------------------------------------------------------------------------
  550-  569 (18.42/ 7.56)	QRQMlgrpphtlSSQQQQPQ
 1168- 1179 (23.94/ 7.07)	QRQM........QQQQQQLL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      32.34|      11|      24|     403|     413|      23
---------------------------------------------------------------------------
  403-  413 (18.44/12.54)	LRRIAAR...FEEK
  425-  438 (13.90/ 7.65)	LRKISMKmltMETK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.68|      13|      15|     951|     965|      25
---------------------------------------------------------------------------
  951-  965 (18.03/13.85)	QQMDSLpqQQRSEQF
  969-  981 (23.65/10.90)	KQFKTM..LERMMQF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03030 with Med15 domain of Kingdom Viridiplantae
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