<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03028

Description Uncharacterized protein
SequenceMALVTPIPAMSERAGSMRFHGITTTSPGSRSSRSSVTEEPVSRLIEEKIFVAVDKHVAKSKCTLVWALQNTGGKKICVVHVHQPSQMIPVMGAKFPVSSVKEEEVKVFREKEREKVHMILDEYLRICHQRGVRAEKMFIETESIENGIVQLISELGIKKLVMGAAADRHHSKKMTELKSRKAIFVRREAPPPCQIWFTCKGYLIHTREAVDDGESEYVASPRPSISANDLLQALSRPESGSVQRLGSNGSSTEHSERVSTGSLNTTDDEERDFDGSGVRGSATVMSTVDENSGRSSPFNFPDGVDDSFHDKIRQATSEAQSSKREAVAENVRRQKAEKNALDAIKRVKQSETAYSEELKRRKDTETAVAKEKERFVTIKKEQEAVTEEVQTATAQKHTLENQIAEADTTMETLNKKLDIAVKLLQKLKSEREELQSERDRALREAEELRTRTAETTSTLQHQLLPHYFTNFSFSEIEEATNRFDSTLKIGEGGYGSIYIGTLRHTQVAIKILNPKSSQGPVEYQQEVDVLSKTRHPNIITLIGACPEGWSLVYEYLPDGSLEDRLTCKNNSPPLSWQNRVRIATEICAALVFLHSNKAHSLVHGDLKPANILLDGNLVSKLSDFGTCSLGRSKSASTDLTGTVPYLDPEASSSGELTPKSDVYSFGVILLRLLTGRPALRIANEVKYALDSGSLNNLLDPLAGDWPFVQAEQLARLALRCCESVGENRPDLGTEVWRVLEPMRASSGGSSSFHLGRNEQRIAPPYFICPIFQEVMQDPHVAADGFTYEAEAIRAWLDSGHDTSPMTNAKLSHNSLIPNHALRSAVQEWLQHHC
Length833
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.486
Instability index48.51
Isoelectric point6.27
Molecular weight92567.36
Publications
PubMed=24916971

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03028
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     219.47|      68|     234|     441|     519|       1
---------------------------------------------------------------------------
  328-  385 (78.31/42.50)	AENVRRQKAEKNALDAIKRVKQSETAYS....EELKRRKDTETAVAKEKERFV...TIKKE..............QEAV..........
  386-  431 (39.48/16.11)	TEEVQTATAQ.KHTLENQI..........................................aeadttmetlnkklDIAVKLLQKLKSER
  445-  519 (101.68/83.27)	AEELRTRTAETTSTLQHQLLPHYFTNFSfseiEEATNRFDSTLKIGEGGYGSIyigTLRHT..............QVAIKILNPKSSQG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.41|      25|      55|      40|      64|       2
---------------------------------------------------------------------------
   40-   64 (41.37/30.31)	PVSRLIEEKIFVAVDKHVAKSKCTL
   96-  120 (41.04/30.00)	PVSSVKEEEVKVFREKEREKVHMIL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03028 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KKEQEAVTEEVQTATAQKHTLENQIAEADT
2) SRPESGSVQRLGSNGSSTEHSERVSTGSLNTTDDEERDFDGSGVRGSATVMSTVDENSGRSSPFNFPDGVDDSFHDKIRQATSEAQSSKREAVAENVRRQKAEKNALDAIKRVKQSETAYSEELKRRKDTET
379
235
408
366










Molecular Recognition Features






MoRF SequenceStartStop




NANANA