<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03023

Description Uncharacterized protein
SequenceMSLDEYADRRERRMKRRYDEASTSIQHHDPWPRDDKTPIDTFKEFADPEKAVNGKECINRVLKDEWDDYDSLFYNAWLGVSIEPTRFIDPYILRKLQIETDIREMITQLGLATWWTLRRLLQMPNRMIKDFDDQVDRLRFMPDPQLLRDLPAILHRPPGGDFQRVVVDALCAIWARVSCTSRRTIRAHSPAAAGPSRQCRDPSANHTDRSYELDYRHDAEFYVLRRRSIRRGWYRSMCGTERTACLGAWYTRDRILQTSLEGPFRCGMRYCRGDDFYVLFYESLLFPTLFQRDCPFVLLEDKQKDKSGGVDIPWISPIFSHEFRRKFNASLSAPFVVLIAPVTQNELVATHIRLPAITFNAFVKLQRHAPPVQISPNYPDPTPSAPTTTATMPASVLSTVPPTSTLQFPPVPSSVSRAPMTSVSLTKSTLLGQKNKDVQLMCVIFVLKLGKGVRENILFQQMELPAVGRESEVVHWTLLYGGIYVYPHDAKSKKLRLLYEYAPMRFIVEQAGGKGSYGHQIVLISNWPRYIRRLRFTLEAKKKWRSWMMYLKDS
Length554
PositionMiddle
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.11
Grand average of hydropathy-0.418
Instability index56.46
Isoelectric point9.40
Molecular weight64327.35
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
phosphatase activity	GO:0016791	IEA:InterPro

GO - Biological Process
carbohydrate metabolic process	GO:0005975	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03023
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      77.23|      22|      37|     370|     392|       1
---------------------------------------------------------------------------
  370-  392 (38.84/25.75)	PPVQiSPNYPDPTPSAPTTTATM
  409-  430 (38.39/21.02)	PPVP.SSVSRAPMTSVSLTKSTL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.04|      24|      43|     182|     209|       2
---------------------------------------------------------------------------
  182-  207 (39.63/19.86)	RRTIR.AHSPAAAGPSR.QCRdpSANHT
  226-  251 (39.41/13.63)	RRSIRrGWYRSMCGTERtACL..GAWYT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.87|      13|      17|     119|     131|       7
---------------------------------------------------------------------------
  119-  131 (24.53/14.23)	RLLQMPN.RMIKDF
  137-  150 (19.34/ 9.83)	RLRFMPDpQLLRDL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03023 with Med21 domain of Kingdom Viridiplantae
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