<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03020

Description Uncharacterized protein
SequenceMAITLIQFLLQNEVTSRILHLASQNMPTHWEDFSQRFRVLTTKSLLVRNSKHINPEALTYLASHTSKFLERESKTIPRGEFHALLSSGSILALTSQHHGTSGSALWLPIDLFFEDIMDGTQAAAASAVENLTGASLVKALQAVNSTTWHDAFLALWLAALRLVQRERDPIEGPVPRTDTFLCVLLSVTPLAVANIIEEEESQWIDQSASSPSNQWKEKKGKCRQGLVNSLQQLGDYESLLTPPISVQSVANQAAAKAVMFISGITNGSGSYENTSMNESASGCSGNMRHLVVEACISRNLLDTSAYLWPGFVNGGTNQVPQGIAGNVSCWSLVMKGSSLTPSLTNSLITTPASSLAEIEKIYEVATTGSEDEKIAAASILCGASLFRGWSIQEHVIIFIVTLLSPQAPANISGSYSHLINCAPFLNVLLVGISPVDCVQIFSLHGVVPVMRYFEK
Length455
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy0.116
Instability index39.60
Isoelectric point5.75
Molecular weight49283.67
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03020
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.91|      22|      96|      43|      92|       1
---------------------------------------------------------------------------
   15-   41 (27.71/41.57)	TSRILHLASQNMPThwEDFSQrfrVLT
   65-   86 (37.20/19.75)	TSKFLERESKTIPR..GEFHA...LLS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     156.64|      48|      66|     220|     268|       2
---------------------------------------------------------------------------
  220-  268 (77.79/51.99)	GKCRQGLVNSL..QQLGDYESLLTPPIsVQSVAN...QAAAKAVMFISGITNGS
  285-  337 (78.85/48.51)	GNMRHLVVEACisRNLLDTSAYLWPGF.VNGGTNqvpQGIAGNVSCWSLVMKGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     285.11|      93|     247|      93|     195|       3
---------------------------------------------------------------------------
   93-  195 (141.45/130.41)	LTSQHHGTSGSALwLPIDLFFEDIMDGTQAAAASAVENLTGASLVKAlqavnsttWH.DAFLALWLAALrLVQRERDPIEGPVPR...TDTFLCVLL.SVTPLAVANI
  343-  440 (143.66/104.70)	LTNSLITTPASSL.AEIEKIYEVATTGSEDEKIAAASILCGASLFRG........WSiQEHVIIFIVTL.LSPQAPANISGSYSHlinCAPFLNVLLvGISPVDCVQI
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03020 with Med33 domain of Kingdom Viridiplantae
Unable to open file!