<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03019

Description Uncharacterized protein
SequenceMAVAPLDSQESLWESVTSLIRSAQEKNVDPLQWALELRLTLSAAGISLPSPDLAHLLVSHIFWENHTPLSWKLLEKAITVTIVPPLLVLALLSHRVIPNRKHHPAAYRLYLELLKRHAFSLMPLIRGSGYHRTMNSIDDILHLSEIFGLPNHEPGSILLAFVFSIVWQLVDASLDDEGLLELTSNKSSNWPHDMEIDGLLKRNDNHGLLEKANTEMAITLIQFLLQNEVTSRILHLASQNMPTHWEDFSQRFRVLTTKSLLVRNSKHINPEALTYLASHTSKFLERESKTIPRGEFHALLSSGSILALTSQHHGTSGSALWLPIDLFFEDIMDGTQAAAASAVENLTGASLVKALQAVNSTTWHDAFLALWLAALRLVQRERDPIEGPVPRTDTFLCVLLSVTPLAVANIIEEEESQWIDQSASSPSNQWKEKKGKCRQGLVNSLQQLGDYESLLTPPISVQSVANQAAAKAVMSISGITNGSGSYENTSMNESASGCSGNMRHLVVEACISRNLLDTSAYLWPGFVNGGTNQVPQGIAGNVSCWSLVMKGSSLTPSLTNSLITTPASSLAEIEKIYEVATTGSEDEKIAAASILCGASLFRGWSIQEHVIIFIVTLLSPQAPANISGSYSHLINCAPFLNVLLVGISPVDCVQIFSLHGVVDGKQKHTSRGPLAVSHCAPFLNVLLVGISPVDCVQIFSLHGVVPLLAGALMPICEAFGSGIPNITWILPTGEVISSHAVFSTAFILLLRLWRFDHPPLDYVLGDVPPVGPQSSPEYLLLVRNCRLECFGKSPKDRMARRRFSKVVDISVDPIFMDSFPRLKQWYRQHQECMASILSELKTGSPVHHIVDSLLSMMFKKTNKGGSQSLTPSSGSSSLSTSGVDDSSDQLKIPAWDILEAAPFVLDAALTACAHGSLSPRELATGLKTLADFLPATLGTMVSYFSSEVTRGLWKPVSMNGTDWPSPAANLASVEQQIELILAATGVDVPRLPADGISAATLPLPLAALVSLTITYKLEKATERFLVLVGPALDALAAACPWPCMPIVTSLWTQKVKRWSDFLIFSASRTVFHHNSDAVIQLLRSCFTCTLSLTPTSQLCSYGGVGALLGHGFGSLYSGGISTAAPGILYIKVHRSIRDVMFLTEEILSLLMFSVKSIATTEKLKKTKDGLRYGVGQVSLSQAMTRVKLAASLGASLVWISGGLNLVQALIKETLPSWFISVHGEEDELGGMVPMLRGYALAYFAILSSAFAWGVDSSSPASKRRPRVLWLHLEFVVSALEGKISLGCDWATWQAYVTGFVSLMVQCTPAWVLEVDVEVIKRLSKSLRQWNEQDLALALLCAGGLGTMGTATELIKRITEAESKLEDHGVDVVGTNDSTSSVQFRLEEEDDDYRALSKIHKKKRCSGKKEEEEVLLEGMPPEYYDDEWQARQREKTKELRRMQREEEEEEERKIEEYREIGLRLKEFPEEDLRKARKLVSSFITAAEEVEERIEEAAEKGELDELVLMIIWNRLDLARRDDEKDAIRSLDLLYRRVETEILKRQASPAMKLLNDLLNMHDGFGDDAWLKDCRKRMAETFPREDPFSILMPPGFDIDMHQGPLRSLVETDNTLLRVDFVREVDALLHEVRLIEEDEEEAGKKGDPEAIARKLKQQEKKRTIRQVEALLDLALNLKW
Length1674
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.017
Instability index47.64
Isoelectric point5.65
Molecular weight184899.32
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
phenylpropanoid metabolic process	GO:0009698	IEA:EnsemblPlants
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03019
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     149.20|      36|      42|     627|     662|       1
---------------------------------------------------------------------------
  627-  662 (74.71/45.48)	SGSYSHLINCAPFLNVLLVGISPVDCVQIFSLHGVV
  670-  705 (74.49/45.32)	SRGPLAVSHCAPFLNVLLVGISPVDCVQIFSLHGVV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.06|      22|     185|    1436|    1476|       2
---------------------------------------------------------------------------
 1444- 1466 (33.03/48.95)	EEEEEEERKIEEYREIGlRLKEF
 1483- 1504 (35.03/ 8.05)	TAAEEVEERIEEAAEKG.ELDEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.59|      34|      36|     992|    1027|       3
---------------------------------------------------------------------------
  992- 1027 (47.55/33.87)	PA.DGISAATlPLPLAALVSLTITYKLEKATErFLVL
 1030- 1064 (63.03/36.14)	PAlDALAAAC.PWPCMPIVTSLWTQKVKRWSD.FLIF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     160.47|      50|     222|    1314|    1442|       4
---------------------------------------------------------------------------
 1384- 1441 (79.28/182.33)	RLEEEDDDYRAL........SKIHKKKRCSGKKEEEEVLleGMPPEYYDDEWQARQRektkelRRM
 1517- 1574 (81.19/27.92)	RRDDEKDAIRSLdllyrrveTEILKRQASPAMKLLNDLL..NMHDGFGDDAWLKDCR......KRM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     109.69|      38|      49|     145|     192|       5
---------------------------------------------------------------------------
   97-  142 (57.31/36.25)	IPNrkHHPAAyrlyleLLKRHAFSLM.PLIRGS....G.YHRTMNSIDDILH
  149-  192 (52.38/68.07)	LPN..HEPGS......ILLAFVFSIVwQLVDASlddeGlLELTSNKSSNWPH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.25|      57|     222|     847|     905|       6
---------------------------------------------------------------------------
  847-  905 (92.97/67.34)	HHIVDSLLSMMfkKTNKGGSQSLTPSSGSSSLSTSGVDDSSDQLKIPAWDILEAAPFVL
 1072- 1128 (97.28/64.04)	HHNSDAVIQLL..RSCFTCTLSLTPTSQLCSYGGVGALLGHGFGSLYSGGISTAAPGIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     101.17|      33|      48|     230|     267|       9
---------------------------------------------------------------------------
  230-  267 (45.81/50.35)	TSRILHLASQNMPThwEDFSQrfrVLTTKSLLVRNSKH
  280-  312 (55.36/39.19)	TSKFLERESKTIPR..GEFHA...LLSSGSILALTSQH
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03019 with Med33 domain of Kingdom Viridiplantae
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