<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03018

Description Uncharacterized protein
SequenceMDQFSGGGNWSMIPNVQSQGNFGTSTNQDHLFLQQQQQQQQPQQFHHPQQQTQQQQFQPQQQQQQEMQFQQFQQQQFIQQQQFHHQQHRLLHSPQQQQPQSSLQSPPPQQTVVHTPQSMMHTPQQQQQLVHTPQQSVQTPQQHQSLASHFHLYPLVEKLSDAVETGTRDQNSDALVSELNGHFDKCQQLLNSISGSLGSKTTMTVDGQKRNLEESEQLLQQRRDLIMEYRKSIEDLVKIEP
Length241
PositionMiddle
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-1.195
Instability index80.33
Isoelectric point6.01
Molecular weight28066.49
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03018
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.56|      21|      23|      36|      57|       1
---------------------------------------------------------------------------
   14-   47 (35.19/ 6.61)	PNV...QS.QGNFgtstnqdhlflqqQQQQQQPQQFHH
  108-  132 (29.36/ 6.80)	PQQtvvHTpQSMM.............HTPQQQQQLVHT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.05|      12|      44|      94|     105|       4
---------------------------------------------------------------------------
   72-   83 (21.76/ 6.18)	FQQQQFIQQQQF
   94-  105 (24.29/ 8.10)	PQQQQPQSSLQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.11|      27|      31|     141|     167|       5
---------------------------------------------------------------------------
  141-  167 (46.51/33.78)	QQHQSLAS....HF.HLYPLVEKLSDAVETGT
  170-  201 (35.60/23.95)	QNSDALVSelngHFdKCQQLLNSISGSLGSKT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03018 with Med9 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MDQFSGGGNWSMIPNVQSQGNFGTSTNQDHLFLQQQQQQQQPQQFHHPQQQTQQQQFQPQQQQQQE
2) QFHHQQHRLLHSPQQQQPQSSLQSPPPQQTVVHTPQSMMHTPQQQQQLVHTPQQSVQTPQQHQSLASHF
1
82
66
150










Molecular Recognition Features






MoRF SequenceStartStop




NANANA