<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03017

Description Uncharacterized protein
SequenceMSSEMKQLIVVAEGTAALGPYWQTIVSDYLHKIIRSFCGSELNGDVRSMVDESFTYPLNLQRNPVSSVELSLVIFNSHGSYCGCLVQRSGWTRDVDIFLHWLSSIQFAGGGFSEAATAEGLAEALMMFPPPPGQAQPSNDLKRHCILITASNPYSLPTPIYRPKLQNAERNENGDALPESRLSDAETVASYFSRCSVSLSVVCPKQLPKIRALYNAGKLNPQSPDLSIDTVKNTFYLVLISENFVEARAALSHSATNVPQTQSPVKMDRATVPPSLPVTGPPPASLPSVSANGPILNRQPVSVGPVPTATVKVEPCTVSSMAAVPTFPHIPSSVARPAAQAIPSVQTSSASSVSQEMVANAENAPDVKPVVSGMTPPLRTGPPGNVNLLNNLSQVRQVMSSAALAGAASSAGQSAVAMHMSNMISTGMATSQPPSQTAFSSGQQGNTSMAGSGGLMGNAQAGQSPGPNNSFSPQTTSNVTSNLGVSQPMPGMNQGSHSGAQMMQGGISMNQNMMTSLGQGNVSSGTGGMMPTPGVGQQAQSGVQQLGGSNSSAPNMQLSQASSGALQPSQSKYVKVWEGNLSGQRQGQPVLITRLEGYRNATASDSLAANWPPTMQIVRLISQDHMNNK
Length629
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.05
Grand average of hydropathy-0.210
Instability index51.79
Isoelectric point8.12
Molecular weight65792.52
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
DNA binding	GO:0003677	IEA:EnsemblPlants

GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
jasmonic acid mediated signaling pathway	GO:0009867	IEA:EnsemblPlants
positive regulation of defense response	GO:0031349	IEA:EnsemblPlants
positive regulation of flower development	GO:0009911	IEA:EnsemblPlants
positive regulation of transcription, DNA-templated	GO:0045893	IEA:EnsemblPlants
red, far-red light phototransduction	GO:0009585	IEA:EnsemblPlants
response to far red light	GO:0010218	IEA:EnsemblPlants
response to red light	GO:0010114	IEA:EnsemblPlants
trichome branching	GO:0010091	IEA:EnsemblPlants
trichome papilla formation	GO:1905499	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats
>MDP03017
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     276.58|      49|      49|     406|     454|       1
---------------------------------------------------------------------------
  350-  403 (45.07/13.01)	..ASSVSQEMVA.NAENApdvkpVV...SGMT........P.PL..RTGPPGNvnllnnlSQVRQVMS.SAA
  406-  454 (90.96/32.53)	GAASSAGQSAVAMHMSNM.....IS...TGMAT.....SQP.PS..QTAFSSG.......QQGNTSMAGSGG
  457-  506 (49.81/15.03)	GNA.QAGQSP...GPNNS.....FSpqtTSNVTsnlgvSQPmPGmnQGSHSGA.......Q.....MM.QGG
  507-  528 (30.47/ 6.80)	..........ISMNQNMM.....TS...LG...............................QGNVS.SGTGG
  547-  587 (60.26/19.47)	GGSNS...SAPNMQLS.Q.....AS...SG........ALQ.PS..QSKYVKV.......WEGNLSGQRQG.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.08|      26|     149|     130|     159|       2
---------------------------------------------------------------------------
  130-  159 (41.33/28.85)	PPPGqAQPSNDLKRHcilITASNPYSL.PTP
  281-  307 (44.75/20.16)	PPPA.SLPSVSANGP...ILNRQPVSVgPVP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      88.71|      28|      42|     163|     192|       4
---------------------------------------------------------------------------
  163-  192 (39.40/35.96)	PKLQnAERNeNGDALPESRLSDAETVASYF
  208-  235 (49.31/33.90)	PKIR.ALYN.AGKLNPQSPDLSIDTVKNTF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03017 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ARPAAQAIPSVQTSSASSVSQEMVANAENAPDVKPVVSGMTPPLRTGPPGNVNLLNNLS
2) ATNVPQTQSPVKMDRATVPPSLPVTGPPPASLPSVSANGP
3) AVAMHMSNMISTGMATSQPPSQTAFSSGQQGNTSMAGSGGLMGNAQAGQSPGPNNSFSPQTTSNVTSNLGVSQPMPGMNQGSHSGAQMMQGGISMNQNMMTSLGQGNVSSGTGGMMPTPGVGQQAQSGVQQLGGSNSSAPNMQLSQASSGA
335
255
415
393
294
565










Molecular Recognition Features






MoRF SequenceStartStop




1) YVKVW
573
577