<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03016

Description Uncharacterized protein
SequenceMGSIGDEVDLEVDETIFVAVAEDVERSKTTVLWAARNFSGKKICLLYVHRPARPASWTHKKLAGGTFRKHAVKVIERVDKQKVDELMDSYLHLLSETQVQTDKLCIAGQNIEEGIVDLIARHNIKWLVMGAASDKHYSWRMTDLKSKKAIFVCKKAPDSCHIWFLCKGYLIFTRNTLENRATNDDGNNRQTMPPLVQLDSDTETRRSEKLESSYMRRRLRYWRSLLEQGSALLGFCKNCADGEKDTGQLEREKVEPRPTTHLSSGSSSSFGEQVGPEPASPEVVGSDTRTPSNVEEKKREGNVAREVHRYDKAMHDIGQSERSVCGEARKEWKEDNSTMEALCKAKALEGLCIKEQSRRTKLEELLEKEKGEVKTVIEQNSGFMKKLQIVQSDNLKLESQIKKLQDLEKEHGEKFDTAMELLKSFRQRRDEIRIDHENAIKEVNALRRLVKGKTIASSGSEMLDYSFKEISEATNEFDPSWKLGEGKYGSFYKGNLQHLQVAVKMLPSYGSQNHFEFERQVEILSRVRHPNLVTIVGTCPESRSLIYQYIPNGSLEDCFSSANNVPALPWESRIRIASEICSALLFLHSNILLDSNLVTKISDYGISQLIPIDGVDKSDPHVDPHYFVSGEMTLESDIYSFGMILLQLLTRRPLSGVLRDVKCAVENDNISAVLDSSAGDWPVSRGKKLANIAIRCCKKNPLNRPVLPIVLRVIDRMKAPELPLSETSSYTNQKVPRKPPSHYLCPIFREVMKDPLIAADGFTYEAEAIREWLANGHDTSPMTNLKMEDCNLIPNQALHLAIQDWQNQW
Length809
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.518
Instability index45.03
Isoelectric point6.75
Molecular weight91769.57
Publications
PubMed=24916971

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
plasma membrane	GO:0005886	IEA:EnsemblPlants
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03016
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     110.33|      39|      39|     366|     404|       1
---------------------------------------------------------------------------
  353-  394 (56.56/36.00)	IKEQSRRTKLeelLEKEKGE.VKTVIEQNSGFMKKLQIVQSDN
  395-  436 (53.76/33.88)	LKLESQIKKL.qdLEKEHGEkFDTAMELLKSFRQRRDEIRIDH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     134.47|      31|      32|     717|     747|       2
---------------------------------------------------------------------------
  678-  709 (36.66/24.61)	..AGDWPVSRGKKLANIAIrccKKN..PLNRPVLPI
  717-  747 (55.30/41.36)	MKAPELPLSETSSYTNQKV...PRK..PPSHYLCPI
  752-  782 (42.51/29.87)	MKDP.LIAADGFTYEAEAI....REwlANGHDTSPM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     117.14|      37|      80|     139|     182|       5
---------------------------------------------------------------------------
  139-  182 (54.10/57.95)	WRMTdLKSKKAIF.VCKKAPDSCHiwflCKGYLifTRNTLENRAT
  222-  259 (63.04/41.55)	WRSL.LEQGSALLgFCKNCADGEK....DTGQL..EREKVEPRPT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.46|      26|      39|     586|     615|       6
---------------------------------------------------------------------------
  586-  615 (40.78/38.23)	FLHSNILLDSNlvtkISDYG..ISQLI...PIDGV
  627-  657 (35.67/23.46)	FVSGEMTLESD....IYSFGmiLLQLLtrrPLSGV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.95|      27|      85|     193|     221|       7
---------------------------------------------------------------------------
  193-  221 (43.58/34.88)	PPLVqlDSDTETRRS...EKLESSYMRRRLRY
  281-  310 (43.37/28.05)	PEVV..GSDTRTPSNveeKKREGNVAREVHRY
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03016 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) TGQLEREKVEPRPTTHLSSGSSSSFGEQVGPEPASPEVVGSDTRTPSNVEEKKREGNVAREVHRYDKA
246
313










Molecular Recognition Features






MoRF SequenceStartStop




NANANA