<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03014

Description Uncharacterized protein
SequenceMVGSERRDERVVVAIDRGKGSQAALKWAVDNLVTSGESLTLVHVKLKQALVITANPNKSSDDVKELFLPFRCFCNRKDIRCEDAVLEDVDAAKGIIGYVKENAIDILVLGASKMTLLKRFKAADVTSTVMKGAANFCTVYAISGSKISSVRSATSSPPPLCAIRPQITARPSNNSMGQRETQDEIEIKYKSQRGFDQASVTDSDKSFVSSDRPSVDLMFPTSRLSIYSEFEDNRCSFATSSCSSEKQSVDLGSSYSAFSPSSQESGRLSTWSLQDDVQAEMRRLKMELRYTMEMYSTACKEAITAKNMSKQLHKWRVEKERRLEEARQAKEAAMAMAENEKAKTRAAMEAIATANRIAEIEAKKRKQIETASLRKAEDKNTSDRRYREYRIEEIEEATENFSINNKIGEGGYGPVYKGTLDYTKVAIKVLRPDARQGRSQFQQEVEVLTSIRHPNLVLLLGACAEYGCLVYEHLENGSVEDLLLKRGNNSPVLLTWQLRFRIAAEIATSLNFLHQMKPEPVVHRDLKPANVLLDQHMVSKIADVGLARLVPPSVSDAVTQYRVTSAAGTLCYIDPEYQQTGMLGTKSDVYSFGITLLQILTGKPPMSLTHQVQKAIEGGTFAEMLDPDVHDWPLEEALVLAKIGLRCAELRRKDRPNLGKDVLPELKRLMDLAEESMSIVRSE
Length683
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.388
Instability index45.16
Isoelectric point7.86
Molecular weight76151.10
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro

GO - Biological Process
pollen tube growth	GO:0009860	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03014
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      92.97|      27|      32|     206|     236|       1
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  209-  236 (45.91/32.72)	SSDRPSVDLMFPTSRLSIYSEfEDNRCS
  243-  269 (47.06/21.85)	SSEKQSVDLGSSYSAFSPSSQ.ESGRLS
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     132.03|      43|      72|       6|      49|       2
---------------------------------------------------------------------------
    6-   49 (66.24/55.37)	RRDERVVVAIDRGKGSQAALK.WAVDNLVTSGESLTLVHvKLKQA
   80-  123 (65.78/49.81)	RCEDAVLEDVDAAKGIIGYVKeNAIDILVLGASKMTLLK.RFKAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.92|      27|      32|     330|     361|       3
---------------------------------------------------------------------------
  330-  361 (37.76/30.08)	KEAAMAMAENEKAKTRAAMEaiataNRIAEIE
  369-  395 (45.16/25.54)	ETASLRKAEDKNTSDRRYRE.....YRIEEIE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      55.43|      13|     360|     271|     283|       4
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  271-  283 (24.73/15.57)	WSLQDDVQ........AEMRR
  632-  652 (15.47/ 7.21)	WPLEEALVlakiglrcAELRR
  657-  668 (15.23/ 6.98)	.NLGKDVL........PELKR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      72.47|      22|     393|     145|     166|       5
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  145-  166 (41.46/23.89)	SKISSVRSATSSPP................PLCAIRPQ
  539-  576 (31.01/16.29)	SKIADVGLARLVPPsvsdavtqyrvtsaagTLCYIDPE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03014 with Med32 domain of Kingdom Viridiplantae
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