<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03010

Description Uncharacterized protein
SequenceMFQFGDMQRYHPANCTSAVNNTAMGARDSGRADSSSIGNYSLNSRHVVSDERPPPLTPYKLRCEKDGLNSRLGPPDFHTPTSSSPEENLTKEYIQFGYKETVDGLKEADEIILTQVHTFSKPVVLKCKESVRKCFRAINESRALKRKAGQVYGVPLSGSLLGKPGFPEQKSCGEETKKKWIESLSQQHKRLRSLADNIPGYRRKTLFEVLIRNNVPLLRATWFIKVTYLNQVRPSTAAISSGTPDKTQNSRCEQWTKDVIEYLQYLLDELLSRNSSYPSQQTRDRSPQMLYAGSMQKISPASSSLYGEETSLHFKWWYMVRLLQWHHAEGLLFPYLIVDWVLRLLQEKDVFEILLLLLPIVYVFLESIVLSQTYVQSLVAIAVRFIEEPVPGGSDLVDNSRRAYTLSALVEMVRYLVLAAPDTFVSSNCLPLPPSIAACGPNDVSYASKAYENLEKLRSNSSEISTQFQGRGVDSRFGFLSFDYTISTIQRSADDLAKIASAGYPQHNVAKAVQALDKALSDGDIRAAYSYLFEDLCNGAVDETWIAEVSPCLRSSLRWIGAISTSFVCSAFFLIEWATCDFRDFRAGVPKDIKFSGRKDCSQVYLVIQLLKQKILGGEFAARKGKNHRSNSLGVSKPSSSMDAFESPGPLHDIIVCWIDQHEVHRGGAKRLQLLVFELIRSGIFNPLAYVRQLIFSGMIDMIQSAADPERRIRHHRILKQLPGWFVYDTLEEAQLLGGDKLEEAVRIYSNERRLLLRELLVNADQKSKKNSTFLPSVDLPRTFNAMADNQELRKHTKRSKDIRELKERIAALLQFPDVSCGVKNSVRDEFQSSVKESSGSVYSKMDHLESTPGCEDCRRAKRKKMNDEKSSCYQGSSPIALDEEDNWWIKKGFKTVEPSLKVDPLMELTKQVPRGRQKMVRKTQSLAQLQAARIEGSQGASTSHVCDNKVSCPHHGPGVEGENHKVVDVFRTSTSVDIVSVGNSLKQLQFVDKRSVAVWLVNVVRQLVEESEKSSVRVGQFNKGAPVEEKNTVRWKLGADELSSILFLMDLSRDLVSVVKFLFWLLPRAKSSPSFSVQGGRNLVIMPRNVENNVCEVGEAILVSSLRRYENILFSADLVPEAMTALMARAASLMSSNGKISGSAALVYARYILNGYGNLPSVVEWHNNFKATCEKRLLSELDHTRSGNGEYEIPLNVPAGVDNADDYLRKKISSSGTRLSRVGLNMREVVQRHVEETTHYLRKLIGTDTMKASLAEKNDDGYQVAQQIVVGLMDCIRQTGGAAQEGDPSLVSSAVSAIINSVSNSMARILDFSVGNVHQNRPSGVGSSNIARHILQIHITCLCLLKEALGERQSRVFEIALATESSTALAGAFAPAKGSRGQHQLSPESYDSIANNTNDIPNGTGKVALSKATKVTAAVSALVIGAITHGVITLERIVGLLRLRECLDFVQFVRRTKSSSNGSARSVGASKVDNSIEVYVHWFRLLVGNCKTVSEGMVLELVGESSVVAVSRMQRMLPLKLVFPPAYSIIAFVLWRPLLSSGNSNSSVHEDTHRLYQSLTVAFHDVIKHLPFRDVCFRDTQGLYELIVADSTDAEFAAVLELNGMDMHLKSVAFAPLRARLFLNSVIDCKMPSSGYSHEALSESKKRHQGNGTKLVDKLVSVLDCLQPAKFHWQWVELRLLLNEQALTEKLENHDMPLTDAIRSSCPTSEKPEASENEKNFIQILLTRLLVRPDAVPLFSEVVHLFGRSVEDSMLKQAEWFLAGPDVLLGRKTIRQKLIIVGESKGLPTKPQFWKPWGWCSNSSFDPITANKAGKKRKLESTSMEEGEVIEEGLGSKKLLFDENSPSVGYGITTERAFVQLVLPCIDQSSDESRSIFVNELVRQFSNIEQQLSSVTIRSITNNKQMGTASSGSEVSSNKGSTRKGPRGGSPSLARRSSINTTDTAPPPSPAALRASMSLRLQFLLRLLPVICREPSFRNTRHTLASTIVRLLGSRVVYEDSAACSPRSDVSKAETESTRDPSSMADLSSDVLFDRLLFVLHGLLSNHQPNWLKPRSSSNESSKDFTLFDRDAAESLQNELARMQLPDTIRWRIQAAMPILLPSLRCSLSCQPHSVPPTALTLVQPSGSAAAAGLNQRNSLATPKTVTAGQGKLKQNMLSPCQQQEADNTDVVDPWTLLEDGTSSGQSSSNASNSSDMGNLRATCWLKGAVRVRRTDLTYIGSVDEDS
Length2228
PositionKinase
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.275
Instability index48.27
Isoelectric point8.77
Molecular weight247182.87
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03010
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      86.13|      24|      91|      70|      95|       1
---------------------------------------------------------------------------
   70-   95 (42.05/27.95)	SRLGPPDFhtPTSSSPEENLTKEYIQ
  159-  182 (44.09/23.16)	SLLGKPGF..PEQKSCGEETKKKWIE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     105.89|      37|      91|    1510|    1555|       2
---------------------------------------------------------------------------
 1476- 1524 (58.97/50.54)	SIEVYVHWFRLLV.GNC.KTVSEGmvlelvgessvvAVSRMQRMLPLKLV.F
 1529- 1578 (46.91/44.06)	SIIAFVLWRPLLSsGNSnSSVHED..thrlyqsltvAFHDVIKHLPFRDVcF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     442.35|     143|     376|    1618|    1780|      13
---------------------------------------------------------------------------
  876- 1001 (166.36/92.91)	GSSPIALDEEDNWWIKKGFKTVEPSLKV.DPLMELTKQVPRGRQKMVRKTQSLAQlqaaRIEGSQGASTSHVcdnKVSCPHHGPGVEGENHK.VVDVFRTSTSV..DIVSVGN.SLKQLqFvdKRSV.......AVWL...................
 1636- 1780 (234.04/174.52)	GYSHEALSESKKRHQGNGTKLVDKLVSVlDCLQPAKFHWQWVELRLLLNEQALTE....KLENHDMPLTDAI...RSSCPTSEKPEASENEKnFIQILLTRLLVRPDAVPLFS.EVVHL.F..GRSVEDSMLKQAEWFLAGP.DVLLGRKTIRQKLI
 2105- 2159 (41.95/13.75)	.................................................................................................LRCSLSCQPHSVPPTAlTLVQP.S..G.SAAAAGLNQRN.SLATPkTVTAGQGKLKQNML
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03010 with Med12 domain of Kingdom Viridiplantae
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