<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03007

Description Uncharacterized protein
SequenceMVVMSNKFFESIGGAPAYSMVAVAVKGSVGDAVGGAASRRALRWTVENLLPNVDRLVLVHVMPTVTTIPSPSGSKIPVEELEESVVAMYKRDLRKEYEQVFVPFKKLCGSSKVETLLLEHDDPAKALLKYVSDSEVECLVLGSCSTSFLTRKKGQEMPLTVLREAPETCEIYVICKDRILTKSTNQLSPDNESITLSPDSSSSFRIPQGAEAYTETFSRTRSDRTGLSASSMSSSGRKHSRRPASLPHSNPVSRVFSDAQSSTDIGLVDDEHTRSVIRHSIVSGNKMQSNPGANIKTPKSDVKSEVAQLRKEVETTLSMYKQACEELVHKQTQVKSLSSECIKETRRVITALEKEEMLRKAAAEEKEKHLKAVKEVQEAKSMLAKEFCDRQLAELSALKQSIEKQKVIDQLFLKDGRYRKYTKEEIAAATDNFSSRKIIGEGGYGKVYKCSLDHTPVALKVLKPDSIEKKEEFLREISVLSQLRHPHVVLLLGACPDNGCLVYEYMENGSLDAHISPKKGKPSLSWFIRFRIIYETACGLAFLHNSKPEPIVHRDLKPGNILLDRNFVSKIGDVGLAKLMSEESPDSVTVYRNSIIAGTLYYMDPEYQRTGTIRPKSDLYAFGIIILQLLTARHPNGLLFCVEDAVRRGCFGDMLDGSVRDWPMAEAEELARIAIKCSQLKCRDRPDLDTQVLPALKRILESANERLKREQDNVRPPSHYYCPILKEIMEDPYIAADGFTYEGRAIRAWIQHNQNVSPVTKHRLKHCDLTPNHTLKSAIQEWRSRSRLDLSTTLGSF
Length797
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.389
Instability index51.95
Isoelectric point8.64
Molecular weight89299.40
Publications
PubMed=24916971

Function

Annotated function Functions as an E3 ubiquitin ligase. 
ECO:0000256	ARBA:ARBA00003861
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03007
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.63|      22|     145|     447|     510|       1
---------------------------------------------------------------------------
  484-  510 (36.67/85.16)	RHPHVVLLlgaCPDN....GClvYEYMENGS
  633-  658 (39.96/ 8.69)	RHPNGLLF...CVEDavrrGC..FGDMLDGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     163.43|      35|      38|     217|     251|       2
---------------------------------------------------------------------------
  190-  219 (36.06/17.65)	...D.....NESITLSPDSSSS...FRIPqGAEAYTET.FSR
  220-  254 (58.14/32.58)	TRSD.....RTGLSASSMSSSGRKHSRRP.ASLPHSNP.VSR
  255-  291 (38.98/19.63)	VFSDaqsstDIGLVDDEHTRSVIRHSIVS.GNKMQSNP....
  584-  609 (30.25/13.73)	...............SPDSVTVYRNSIIA.GTLYYMDPeYQR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     198.79|      46|      63|     361|     406|       3
---------------------------------------------------------------------------
  311-  335 (30.77/14.08)	.............KEVETTLSMY.KQACE....EL.VHK.QT..QVK
  336-  360 (32.93/15.51)	SLSSECIKETRRVITALEKEEML......................RK
  361-  406 (72.89/41.97)	AAAEEKEKHLKAVKEVQEAKSMLAKEFCDRQLAELSALK.QSIEKQK
  427-  471 (62.19/34.88)	AAATDNFSSRKIIGEGGYGK..VYKCSLDHTPVALKVLKpDSIEKKE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03007 with Med32 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) LVDDEHTRSVIRHSIVSGNKMQSNPGANIKTPKSDVKSEVAQ
2) PQGAEAYTETFSRTRSDRTGLSASSMSSSGRKHSRRPASLPHSNPVSRVFSDAQSSTDI
267
207
308
265










Molecular Recognition Features






MoRF SequenceStartStop




NANANA