<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03004

Description Uncharacterized protein
SequenceMDLDDFRSVMDNAGVDVWTFIDTAILVASLDYGQELKRRRDNIVERLYATSMANKCRNCDFGGGGGEVARANGSGGHEEEEEGGGEVREKSVNGEDDDEDDGYDPFAGLFDDEQKSVLEIKERLEDPDLSEEDLVELLQNLDDMEITFQALQETDIGRHVNKVRKHPSNDVRILAKKLVKKWKETVDEWVKLNPPGDLEPPSLIADEDSPQQRALHNGNRQQVPDFGYSPVPQTTQNGYSGSSSKNSNVAQPERKPRPVAPPQRRESPSPAKPSRPPPSQQPIQREKEHKEIDFDSARKRLQQNYRQAENAKKQRTIQVMDIHEIPKPKKGGFFPRRGGSSQGGGGRHW
Length349
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-1.107
Instability index65.48
Isoelectric point5.20
Molecular weight39259.81
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03004
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.83|      16|      17|      64|      80|       1
---------------------------------------------------------------------------
   64-   80 (25.62/18.76)	GGGEVaRANGSGGHEEE
   83-   98 (29.21/16.88)	GGGEV.REKSVNGEDDD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.05|      10|      18|     209|     218|       2
---------------------------------------------------------------------------
  209-  218 (18.95/11.89)	SPQQRALHNG
  229-  238 (19.11/12.06)	SPVPQTTQNG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.56|      16|      19|     250|     266|       4
---------------------------------------------------------------------------
  250-  266 (27.45/16.60)	AQPERKPrPVAPPQRRE
  271-  286 (32.11/15.50)	AKPSRPP.PSQQPIQRE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03004 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GEVARANGSGGHEEEEEGGGEVREKSVNGEDDDEDDGYDPFAG
2) WVKLNPPGDLEPPSLIADEDSPQQRALHNGNRQQVPDFGYSPVPQTTQNGYSGSSSKNSNVAQPERKPRPVAPPQRRESPSPAKPSRPPPSQQPIQREKEHKEIDFDSARKRLQQNYRQAENAKKQRTIQVMDIHEIPKPKKGGFFPRRGGSSQGGGGRHW
66
189
108
349










Molecular Recognition Features






MoRF SequenceStartStop




1) KEIDF
2) LEIKERL
3) RILAKKLVKKWK
4) VMDIHEIPKPKKGGFFPRRGG
290
118
172
319
294
124
183
339