<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03003

Description Uncharacterized protein
SequenceMKPPQSAASLDRWRDYFRRGDSDIFEIIDHAIMVAATDCPIKFKSRRDRIAELLFSCRVTRCTGCHHSRELSLPGDDEAVDGSKESKANSSRGENNHINQIVVGSYDCDDEAEALSDAIEEFSMVCEEVVRIKEILLNKDDEPHSVILESLRKLKLMSLDVDVLKSTEIGKAVNGLRKHGSDKIRQLAKTLIAEWKELVDQWVNTTKEIAGGAEGTPESANPSVVDEEEEEEEEEVFPSLPYGVDIFTPEANGFEMFNGDFFDSLDFDGNPCNSGEYNTSREHERKPQKRRPEGTQMRIQKPSSADGNGTRRPLNQRMKNEVGSVHKSENHMIQRRKPPQEKLKGLDADAKFEFAKRKLQESYQQHDKAKKQRTIQVLETMPKQGSAAQKPQLKRPGMNNRSWSNGHK
Length408
PositionUnknown
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.06
Grand average of hydropathy-0.916
Instability index49.66
Isoelectric point5.79
Molecular weight46254.22
Publications
PubMed=24916971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03003
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.45|      17|      23|     327|     347|       3
---------------------------------------------------------------------------
  327-  347 (18.71/22.87)	KSEnhmIQRRKpPQEKLKGLD
  351-  367 (29.74/16.58)	KFE...FAKRK.LQESYQQHD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      61.45|      13|      15|     259|     271|       4
---------------------------------------------------------------------------
  235-  245 (14.90/ 7.15)	.EVFPSLPY.GVD
  259-  271 (24.35/16.34)	GDFFDSLDFDGNP
  275-  287 (22.20/14.25)	GEYNTSREHERKP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03003 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DGNPCNSGEYNTSREHERKPQKRRPEGTQMRIQKPSSADGNGTRRPLNQRMKNEVGSVHKSENHMIQRRKPPQEKLKGLDADAKFEFAKRKLQESYQQHDKAKKQRTIQVLETMPKQGSAAQKPQLKRPGMNNRSWSNGHK
2) TKEIAGGAEGTPESANPSVVDEEEEEEEEEVFPSLPY
268
206
408
242










Molecular Recognition Features






MoRF SequenceStartStop




1) DAKFEFAKRKL
2) LDRWRDYFR
3) RTIQVLETMPKQGSAAQKPQLKRPGMNNRSWSNGHK
349
10
373
359
18
408