<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP03001

Description Uncharacterized protein
SequenceMEGKKPARSLSEHLSLPPTPSPAVAVAINGKKKSKYVAFWALEKFIPEGFSDFKLIYVRPPVTYIPTPMGNAISISELKADVVSAYRQEVDWNTNETLRPYKKMFERRKVRVEILVLESHDPVAAIAEEIAGTRVTKLVIGMSLRGFFSRKIDMSSMIATAVPRFCTVYVVSKGKLASVRPSDSDASGTIRIERIERDSFTSGSTDSPSPRVPSDYQDFLSFVSEAQSRVSHFLHPAKHSEVGSSAVVQMDTSSSETDQSEVSTGRAMQIVPSGGNEEKKSTTSNESFSASFPMGAEAYHAMSFASKWRDHEDRRSIMSSSSSNNHDITNMDWGAVVPENYSFVSHQASNMSEGLLSVHSVTDNNQVNLNFEIEKLRAELKHVQEMYAMAQTETVDASQKLTELNQRKYEESEKLMELKEKEELAKDTASKEKQRYEETMKEAEKVKELMMKEALRRREAEIKAERDAKEKDKLQASLVSPGIQYQHYSWEEIAAATSDFSEDLKIGMGAYGTVYKCNLHHTTGAVKVLHAGETQLSKQFDQELEILSKIRHPHLVLLLGACPERGCLVYEYMDNGSLDDRLMQVNDTPAIPWFERFRIALEVASALVFLHKSKPRPIIHRDLKPGNILLDHNFVSKLGDVGLSTMVNQDDAASKLTVFKKTSPVGTLCYIDPEYQRTGIISPKSDVYSLGIVILQLITGKPAIAITHMVEEAIGDDAEFMALLDVKAGPWPVSETRELAALGLCCTELRRRDRPDLKDQIIPALERLRKVVDKAQNLIGRTPSGPPSHFICPLLKGVMNEPCVAADGYTYDREAIQDWLRENDTSPVTNLPLPNKNLLANYTLYSAIMEWKSNKQ
Length856
PositionTail
OrganismBrassica oleracea var. oleracea
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Brassicales> Brassicaceae> Brassiceae> Brassica.
Aromaticity0.07
Grand average of hydropathy-0.412
Instability index41.99
Isoelectric point6.06
Molecular weight95769.86
Publications
PubMed=24916971

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP03001
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.49|      18|      47|     419|     437|       1
---------------------------------------------------------------------------
  419-  437 (24.26/19.90)	KEKEELAKDTASKEKQrYE
  469-  486 (28.23/17.49)	KEKDKLQASLVSPGIQ.YQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      69.69|      21|      37|     268|     304|       3
---------------------------------------------------------------------------
  277-  299 (33.03/40.94)	EEKKSTTSNesFSASFPMGAEAY
  491-  511 (36.66/ 9.32)	EEIAAATSD..FSEDLKIGMGAY
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.76|      17|      37|     362|     380|       4
---------------------------------------------------------------------------
  362-  380 (20.09/21.25)	TDNNQVNLNfEIEKLrAEL
  402-  418 (29.67/18.39)	TELNQRKYE.ESEKL.MEL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.27|      19|     118|     221|     240|       5
---------------------------------------------------------------------------
  199-  217 (34.31/23.59)	SFTSGSTDSPSPRV.PSDYQ
  221-  240 (27.96/24.08)	SFVSEAQSRVSHFLhPAKHS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP03001 with Med32 domain of Kingdom Viridiplantae
Unable to open file!